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Fix failing examples in gallery #720

Merged
merged 4 commits into from
Dec 20, 2024
Merged

Fix failing examples in gallery #720

merged 4 commits into from
Dec 20, 2024

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padix-key
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codspeed-hq bot commented Dec 15, 2024

CodSpeed Performance Report

Merging #720 will degrade performances by 89.47%

Comparing padix-key:docs (8e8c86e) with main (0acb143)

Summary

⚡ 5 improvements
❌ 4 (👁 4) regressions
✅ 38 untouched benchmarks

Benchmarks breakdown

Benchmark main padix-key:docs Change
benchmark_indexing_from_sequences[None-KmerTable] 12.8 ms 10.1 ms +26.36%
👁 benchmark_kmer_decomposition[None] 155 µs 193.9 µs -20.02%
👁 benchmark_structural_alphabet_methods[to_protein_blocks] 8.8 ms 83.8 ms -89.47%
benchmark_get_structure[bcif-True] 83.5 ms 75.2 ms +11.02%
benchmark_get_structure[cif-False] 77 ms 68.2 ms +12.89%
benchmark_get_structure[cif-True] 137.5 ms 123.4 ms +11.43%
benchmark_serialize_pdbx[bcif] 84.2 ms 74.6 ms +12.88%
👁 benchmark_set_structure[bcif-True] 28.2 ms 52.3 ms -46.13%
👁 benchmark_set_structure[cif-True] 127.1 ms 143.6 ms -11.45%

@padix-key padix-key marked this pull request as ready for review December 20, 2024 11:37
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padix-key commented Dec 20, 2024

The performance regressions are merely due to the different Python version in the CI environment, as no code related to the benchmarks has been changed.

@padix-key padix-key merged commit 8155123 into biotite-dev:main Dec 20, 2024
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