Gatk-variantcalling

This repository contains a Biowdl workflows which uses Haplotypecaller to perform variantcalling.

Documentation

You can find the documentation here

This workflow is part of Biowdl, developed by the SASC team at Leiden University Medical Center.

For any question related to this workflow, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.

Name		Name	Last commit message	Last commit date
Latest commit History 314 Commits
.github		.github
docs		docs
scripts @ 4142daa		scripts @ 4142daa
tasks @ 0ed76c1		tasks @ 0ed76c1
tests		tests
.gitmodules		.gitmodules
CHANGELOG.md		CHANGELOG.md
LICENSE		LICENSE
README.md		README.md
VERSION		VERSION
calculate-regions.wdl		calculate-regions.wdl
ci_tests.json		ci_tests.json
dockerImages.yml		dockerImages.yml
jointgenotyping.wdl		jointgenotyping.wdl
multisample-variantcalling.wdl		multisample-variantcalling.wdl
pytest.ini		pytest.ini
requirements-test.txt		requirements-test.txt
single-sample-variantcalling.wdl		single-sample-variantcalling.wdl