change version #132
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: [push, pull_request, workflow_dispatch] | |
| env: | |
| MIN_COVERAGE_REQUIRED: 80 | |
| jobs: | |
| test: | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Test outputs | |
| run: | | |
| python -m pip install . | |
| python -m pip install coverage | |
| bash run_test.sh | |
| - name: Test with old biopython | |
| run: | | |
| python -m pip install biopython==1.79 | |
| bash run_test.sh | |
| - name: Coverage | |
| run: | | |
| coverage report | |
| #test $(coverage report | grep TOTAL | awk '{ print $4 }' | tr -d "%") -ge $MIN_COVERAGE_REQUIRED |