refactor and simplify #147
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| name: CI | |
| on: [push, pull_request, workflow_dispatch] | |
| env: | |
| MIN_COVERAGE_REQUIRED: 80 | |
| jobs: | |
| test: | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Test outputs | |
| run: | | |
| python -m pip install . | |
| python -m pip install coverage | |
| bash run_test.sh | |
| - name: Test with old biopython | |
| run: | | |
| python -m pip install biopython==1.79 | |
| bash run_test.sh | |
| - name: Coverage | |
| run: | | |
| coverage report | |
| #test $(coverage report | grep TOTAL | awk '{ print $4 }' | tr -d "%") -ge $MIN_COVERAGE_REQUIRED |