v1.5.0

Overhaul of make-mapping should be much more accurate in edge cases with identifying compatible contigs.

The macOS (darwin) binary is a dynamically linked binary so the htslib (>= 1.13) shared library must be installed to use it (unlike the linux binary).

Both binaries were compiled with ldc 1.28 in release mode.

Full Changelog: v1.4.0...v1.5.0

v1.4.0

Full Changelog: v1.3.0...v1.4.0

No dependencies are required for the attached x86_64 linux binary as all dependencies are statically linked along with musl-c.

The macOS (darwin) binary is a dynamically linked binary so the htslib (>= 1.13) shared library must be installed to use it (unlike the linux binary).

Both binaries were compiled with ldc 1.28 in release mode.

Updated CLI

CLI has been updated, some new warnings, and a few new functions for the python extension.

Attached release was built with LIBRARY_PATH=/usr/local/lib dub build -b release --compiler ldc2 using ldc version 1.24.0 on ubuntu 21.04 with dynamically linked htslib 1.12 (libpython2.7 no longer a dependency for the binary).

Initial release

Initial release

• Basic support for conversion of contig names in GFF, VCF/BCF, BED, BAM/SAM
• Can build mapping files
• Can download mapping files from dpryan79's repo ChromosomeMappings
• python support via pyd

Attached release was built with LIBRARY_PATH=/usr/local/lib dub build -b release --compiler ldc2 using ldc version 1.24.0 on ubuntu 21.04 with dynamically linked htslib 1.12, and libpython2.7.