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Update README.md
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MichaelChuai authored May 13, 2018
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Expand Up @@ -48,6 +48,12 @@ seq_feature_only = False
dcmodel = DCModelOntar(sess, on_target_model_dir, is_reg, seq_feature_only)
```

Model file name | Description
-----------|------------
ontar_ptaug_cnn.tar.gz | CNN-based on-target classification model with pre-training and data augmentation
ontar_pt_cnn_reg.tar.gz | CNN-based on-target regression model with pre-training and data augmentation
ontar_cnn_reg_seq.tar.gz | Sequence feature-only CNN-based on-target regression model with data augmentation

#### Prediction

```python
Expand Down Expand Up @@ -79,6 +85,11 @@ is_reg = True
dcmodel = DCModelOfftar(sess, off_target_model_dir, is_reg)
```

Model file name | Description
-----------|------------
offtar_pt_cnn.tar.gz | CNN-based off-target classification model with pre-training
ontar_pt_cnn_reg.tar.gz | CNN-based off-target regression model with pre-training

#### Prediction

```python
Expand All @@ -87,3 +98,7 @@ predicted_off_target = dcmodel.offtar_predict(x_sg_off_target, x_ot_off_target)


## Citation
Guohui Chuai, Qi Liu et al. *DeepCRISPR: optimized CRISPR guide RNA design by deep learning.* (**Manuscript submitted**)

## Contacts
18alexanderm117@tongji.edu.cn

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