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bmsacchi/README.md

Howdy! 🤠

My name is Bianca Sacchi, I am a PhD candidate in the Wright lab at U of T EEB.

  • 🌱 My current research focus is Y chromosome degeneration and silencing in plants with very young sex chromosomes
  • 🧬 I love working with non-model genomes, learning new coding and bioinformatics skills, and diving into data (from frustrating data wrangling to genome visualization)
  • 💻 These days I'm working on my remaining thesis projects and learning about industry and government research careers
  • 🤠 When I'm not troubleshooting code or reading papers you can find me bird watching 🦆, rock climbing 🧗‍♀️, or hanging out with my cat Edgar 🐈

PhD projects

Project 1

Y chromosome degeneration in Rumex hastatulus (XYY cytotype), a plant with very young sex chromosomes

  • Extensive rearrangement and ~30% Y gene loss in a <10 MYA sex chromosome
  • Presenting a complete, haplotype-level assembly of a species with two Y chromosomes
  • Collaboration with Zoë Humphries (TE expert)

Project 2

Early regulatory evolution contributes to Y chromosome degeneration in Rumex hastatulus - preprint coming soon

  • Widespread pattern of decreased Y expression relative to X expression (between gametologs)
  • Increased nonsynonymous substitution rate in genes with lower Y expression
  • No evidence of dosage compensation between sexes among X-linked hemizygous and silenced genes

Project 3

Functional gene evolution on the Y chromosomes of Rumex hastatulus - in progress

Popular repositories Loading

  1. xyymale_analyses xyymale_analyses Public

    Scripts and analyses regarding samples mapped to the new brand new xyy male r hastatulus assembly.

    Shell

  2. rumex_pangenome_annotation rumex_pangenome_annotation Public

    RMarkdown

  3. genespacev1_rumex genespacev1_rumex Public

    R

  4. ase_xyymale_May2023 ase_xyymale_May2023 Public

    HTML

  5. paperpile-to-notion paperpile-to-notion Public

    TeX

  6. rhastxyy_hybgenome rhastxyy_hybgenome Public

    what is the coverage of genomic reads on our assemblies?

    HTML