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Simulation of Most Permissive Boolean networks

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Simulation of Most Permissive Boolean networks

⚠️⚠️⚠️THIS MODULE IS DEPRECATED IN FAVOR OF mpbn ⚠️⚠️⚠️

Since version 2.0, mpbn ships the mpbn.simulation module and mpbn-sim command line. It is integrated in the CoLoMoTo Docker image since version 2022-12-01.

Installation

pip install https://github.com/bnediction/mpbn-sim/archive/refs/heads/main.zip

Usage

The mpbn_sim command takes as input a JSON file describing the model and the simulation parameters. See https://github.com/bnediction/mpbn-sim/tree/main/experiments for example of experiment files.

mpbn_sim experiments/file.json

See mpbn_sim -h for options.

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