This repository contains configuration, GIS, analysis files used for modeling the prevalence of malaria (P. falciparum) in Rwanda. These configurations are primarily intended to study 1) the development of antimalarial resistance in the parasite, and 2) possible interventions that the National Malaria Control Programme can implement.
The origin repository for the simulation can be found at maciekboni/PSU-CIDD-Malaria-Simulation, although the studies in this repository are intended to be run against 4.0.0 and 4.0.x versions that can be found under rjzupkoii/PSU-CIDD-Malaria-Simulation.
GIS - GIS files for Uganda, as prepared for the simulation.
Scripts - Scripts used for model calibration and analysis.
Studies - Configuration files used for model validation and de novo mutation simulations.
All simulations were performed on the Pennsylvania State University’s Institute for Computational and Data Sciences’ Roar supercomputer using the configurations present in Studies.