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Run ruff over codebase #3342

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Run time

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Job	Run time
build (3.8, ubuntu-latest)	8m 27s
build (3.8, windows-latest)	10m 22s
build (3.9, ubuntu-latest)	8m 26s
build (3.9, windows-latest)	10m 42s
build (3.10, ubuntu-latest)	8m 37s
build (3.10, macOS-latest)	6m 32s
build (3.10, windows-latest)	12m 21s
build (3.11, ubuntu-latest)	7m 30s
build (3.11, macOS-latest)	4m 41s
build (3.11, windows-latest)	9m 39s
build (3.12, ubuntu-latest)	7m 58s
build (3.12, macOS-latest)	5m 44s
build (3.12, windows-latest)	9m 39s
build (3.13-dev, ubuntu-latest)	11m 8s
build (3.13-dev, macOS-latest)	7m 4s
build (3.13-dev, windows-latest)	12m 52s
build (3.8, macos-13)	12m 16s
build (3.9, macos-13)	12m 8s
	2h 46m 6s