Fixing Pandas deprecation warnings. #2966
Workflow file for this run
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| --- | |
| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| static-analysis: | |
| name: Static analysis | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| uses: ./.github/actions/prepare-poetry | |
| with: | |
| python-version: "3.10" | |
| # Post in-line comments for any issues found | |
| # Do not run if coming from a forked repo | |
| # See https://github.com/marketplace/actions/lint-action | |
| - name: Run linters (with annotations) | |
| if: github.event.pull_request.head.repo.full_name == github.repository | |
| uses: wearerequired/lint-action@v2 | |
| with: | |
| flake8: true | |
| flake8_command_prefix: poetry run | |
| flake8_dir: resqpy | |
| mypy: true | |
| mypy_command_prefix: poetry run | |
| mypy_args: resqpy | |
| # Alternative step that works with forked repo | |
| - name: Run linters (without annotations) | |
| if: github.event.pull_request.head.repo.full_name != github.repository | |
| run: | | |
| poetry run flake8 . | |
| poetry run mypy resqpy | |
| - name: Code formatting | |
| run: poetry run yapf --diff -r -p . | |
| unit-tests: | |
| name: Unit tests (Python ${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| uses: ./.github/actions/prepare-poetry | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Run pytest | |
| run: poetry run pytest --cov=resqpy --cov-report=xml --junitxml=pytest.xml | |
| - name: Upload pytest artifacts | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Unit Test Results (Python ${{ matrix.python-version }}) | |
| path: pytest.xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: coverage.xml | |
| fail_ci_if_error: true | |
| legacy-dependencies: | |
| # Test against older versions of numpy and pandas, | |
| # To ensure resqpy works with the lower bounds of our published constraints | |
| name: Unit tests (older dependencies) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| uses: ./.github/actions/prepare-poetry | |
| with: | |
| python-version: 3.8 | |
| - name: Downgrade numpy and pandas | |
| # Use caret-style requirements (~) to fix minor version but allow patches | |
| run: | | |
| poetry add numpy@~1.22 pandas@~1.1 | |
| poetry show | |
| - name: Run pytest | |
| run: poetry run pytest |