Discussions

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  Multiple spatial integration

  mlen304 asked Jun 26, 2024 in Q&A · Unanswered

  

  

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  Error when taking the union of genes

  haiderabbas678 asked Feb 20, 2024 in Q&A · Unanswered

  

  

  

  

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  TypeError: np.matrix is not supported.

  andrewdchen asked Aug 24, 2023 in Q&A · Unanswered

  

  

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  ValueError: Detected non-contiguous batches.

  wangshuangyi asked Oct 16, 2022 in Q&A · Unanswered

  

  

  

  

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  Scanorama error: passed valued is not matched to AnnData shape

  MikeZhao03 asked Aug 9, 2023 in Q&A · Unanswered

  

  

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  Integrating scanorama with Seurat?

  rjb67 started May 16, 2019 in General

  

  

  

  

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  log-normalized or raw gene expression counts as input to Scanorama

  antonioggsousa asked Jan 20, 2022 in Q&A · Unanswered

  

  

  

  

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  Choosing batches

  tomerlevy1095 started Jun 9, 2023 in Ideas

  

  

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  Can scanorama.correct() be used on raw data for batch correction

  tbrunetti asked Mar 31, 2023 in Q&A · Answered

  

  

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  Scanorama input order

  rvernica asked Oct 6, 2022 in Q&A · Unanswered

  

  

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  Pearson's residuals for Scanorama

  Jay-Leung asked Nov 8, 2022 in Q&A · Unanswered

  

  

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  caught segfault address 0x7f868e894000, cause 'memory not mapped'

  showteeth asked Oct 27, 2022 in Q&A · Unanswered

  

  

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  Discrepancy with genes count in toy dataset

  rvernica asked Oct 26, 2022 in Q&A · Unanswered

  

  

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  Much larger element cout in output matrix

  rvernica asked Aug 27, 2022 in Q&A · Answered

  

  

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  Is it reasonable that i take the harmony embedding as the input of the assemble function in low dimensional space for seeking a corrected matrix?

  WeissTsang asked Aug 17, 2022 in Q&A · Unanswered

  

  

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  Data scaling

  flde asked Jun 21, 2022 in Q&A · Unanswered

  

  

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  Can I guide the alignment to be performed by scanorama?

  antonioggsousa asked May 18, 2022 in Q&A · Answered

  

  

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  Restarting kernel...

  auesro asked Apr 4, 2022 in Q&A · Answered

  

  

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  expression distribution of genes in different clusters

  yihancc asked Mar 29, 2022 in Q&A · Answered

  

  

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  What is the difference between the Scanpy API and the Original API?

  suzuki-shm asked Mar 8, 2022 in Q&A · Answered

  

  

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  The integrated showing error

  honghh2018 asked Aug 14, 2021 in Q&A · Unanswered

  

  

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  Cell cycle regress before run scanorama?

  Zifeng-L asked Jan 6, 2022 in Q&A · Unanswered

  

  

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  IndexError('index (%d) out of range' % max_indx)

  yafeng asked Dec 27, 2021 in Q&A · Answered

  

  

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  First integration Platform effector and, Second integration the samples,How to achieve it using scanorama？

  Tycooner started Nov 17, 2021 in General

  

  

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  Problem importing Scanorama: dependency sklearn.externals.six

  auesro asked Oct 7, 2021 in Q&A · Answered

  

  

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