GitHub - brianpenghe/bamsam-scripts: a set of programs initiated by Georgi Marinov for .sam file/.bam file processing

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a set of programs initiated by Georgi Marinov for .sam file/.bam file processing

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Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
BAMRead1or2.py		BAMRead1or2.py
BAMToReadPosPerChromosome.py		BAMToReadPosPerChromosome.py
BAMalignedReads.py		BAMalignedReads.py
BAMalignmentsPerChromosome.py		BAMalignmentsPerChromosome.py
BAMtoFASTQ.py		BAMtoFASTQ.py
ComplexityFromBAM.py		ComplexityFromBAM.py
MergeBAMPerChr.py		MergeBAMPerChr.py
PEInsertDistFromBAM.py		PEInsertDistFromBAM.py
SAMchromosomeOrder.py		SAMchromosomeOrder.py
SAMstats-table.py		SAMstats-table.py
SAMstats.py		SAMstats.py
bamPreprocessing.py		bamPreprocessing.py
bamToBedGraph.py		bamToBedGraph.py
bedRPKMfromBAM.py		bedRPKMfromBAM.py
combineUnalignedReadsWithBAM.py		combineUnalignedReadsWithBAM.py
countBAMUniqueReadIDs.py		countBAMUniqueReadIDs.py
filterBAMFields.py		filterBAMFields.py
filterBAMMulti.py		filterBAMMulti.py
filterbowtieSAM.py		filterbowtieSAM.py
generateBAMheader.py		generateBAMheader.py
getBAMalignmentsFromCoordinates.py		getBAMalignmentsFromCoordinates.py
getSAMalignmentFromCoordinates.py		getSAMalignmentFromCoordinates.py
getUniqueSAMAlignments.py		getUniqueSAMAlignments.py
make5primeWigglefromBAM-NH.py		make5primeWigglefromBAM-NH.py
makeBedfromBAM-NH.py		makeBedfromBAM-NH.py
makeContigsFromBAM.py		makeContigsFromBAM.py
makeTagAlignFromBAM.py		makeTagAlignFromBAM.py
makedensitygenesegmentation-BAM.py		makedensitygenesegmentation-BAM.py
makewigglefromBAM-NH.py		makewigglefromBAM-NH.py
makewigglefromBAM.py		makewigglefromBAM.py
makewigglefromSAM.py		makewigglefromSAM.py
readMultiplicityBAM.py		readMultiplicityBAM.py
removeSAMheader.py		removeSAMheader.py
removeUnalignedReadsFromSAM.py		removeUnalignedReadsFromSAM.py
resample_bam.py		resample_bam.py
sampleBAM.py		sampleBAM.py
sampleSAM.py		sampleSAM.py
splitBAMbyLength.py		splitBAMbyLength.py