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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.7k 596

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 990 371

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1k 359

Repositories

Showing 10 of 1329 repositories
  • python-sudoers Public

    Python library for parsing a Linux sudoers file

    broadinstitute/python-sudoers’s past year of commit activity
    Python 7 BSD-3-Clause 7 2 3 Updated Dec 30, 2024
  • glama Public

    Genomic long-read analysis modules and applications

    broadinstitute/glama’s past year of commit activity
    Rust 0 BSD-3-Clause 0 0 2 Updated Dec 30, 2024
  • warp Public

    WDL Analysis Research Pipelines

    broadinstitute/warp’s past year of commit activity
    WDL 207 BSD-3-Clause 98 7 20 Updated Dec 30, 2024
  • ml4h Public
    broadinstitute/ml4h’s past year of commit activity
    Python 126 24 30 (1 issue needs help) 21 Updated Dec 30, 2024
  • juniper Public
    broadinstitute/juniper’s past year of commit activity
    Java 9 BSD-3-Clause 5 0 15 Updated Dec 30, 2024
  • heimdall Public
    broadinstitute/heimdall’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 30, 2024
  • carmen-analysis Public
    broadinstitute/carmen-analysis’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Dec 30, 2024
  • bits-appengine Public

    BITS AppEngine Python Package

    broadinstitute/bits-appengine’s past year of commit activity
    Python 0 0 0 2 Updated Dec 30, 2024
  • sherlock Public

    DSP DevOps's deployment source-of-truth service

    broadinstitute/sherlock’s past year of commit activity
    Go 1 BSD-3-Clause 0 0 4 Updated Dec 30, 2024
  • stp_celldega_landscape_files Public
    broadinstitute/stp_celldega_landscape_files’s past year of commit activity
    0 0 0 0 Updated Dec 29, 2024
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