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Merge branch 'stable' of github.com:brsynth/icfree-ml into stable #27

Merge branch 'stable' of github.com:brsynth/icfree-ml into stable

Merge branch 'stable' of github.com:brsynth/icfree-ml into stable #27

Workflow file for this run

name: Tag
on:
push:
branches:
- stable
paths:
- '**.py'
- '!tests/**'
jobs:
Build-Recipe:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Installing make
run: |
sudo apt-get update
sudo apt-get -y install make
- name: Checkout CI/CD Toolkit
uses: actions/checkout@v2
with:
repository: breakthewall/cicd-toolkit
path: cicd-toolkit
persist-credentials: false
fetch-depth: 0
- name: Building recipe
run: |
cd cicd-toolkit
make -C makefiles -f conda.mk build-recipe
- name: Saving recipe
uses: actions/upload-artifact@v4
with:
name: recipe
path: cicd-toolkit/recipe/meta.yaml
Conda-Build:
needs: [Build-Recipe]
runs-on: ${{ matrix.os }}-latest
strategy:
matrix:
os: ["ubuntu", "macos"]
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- name: Checkout CI/CD Toolkit
uses: actions/checkout@v2
with:
repository: breakthewall/cicd-toolkit
path: cicd-toolkit
persist-credentials: false
fetch-depth: 0
- name: Loading recipe
uses: actions/download-artifact@v4
with:
name: recipe
path: cicd-toolkit/recipe
- name: Deploying miniconda
uses: conda-incubator/setup-miniconda@v2
with:
miniconda-version: "latest"
environment-file: cicd-toolkit/recipe/conda_build_env.yaml
activate-environment: test
- name: Building & Testing conda package
run: | # Because on specific channel (e.g. bioconda), run 'make' command instead of 'conda-build'
cd cicd-toolkit
make conda-build
Tag:
needs: [Conda-Build]
runs-on: ubuntu-latest
outputs: # Create variable usable from another job
new_tag: ${{ steps.tag_version.outputs.new_tag }}
steps:
## CREATE TAG/RELEASE
- uses: actions/checkout@v2
with:
persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal access token.
fetch-depth: 0 # otherwise, there would be errors pushing refs to the destination repository.
- name: Bump version and push tag
id: tag_version
uses: mathieudutour/github-tag-action@v5.6
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
release_branches: stable
tag_prefix:
- name: Create Release
uses: actions/create-release@v1
with:
tag_name: ${{ steps.tag_version.outputs.new_tag }}
release_name: Release ${{ steps.tag_version.outputs.new_tag }}
body: ${{ steps.tag_version.outputs.changelog }}
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
## UPDATE CHANGELOG
- uses: actions/checkout@v2
with:
persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal access token.
fetch-depth: 0 # otherwise, there would be errors pushing refs to the destination repository.
- uses: ruby/setup-ruby@v1
with:
ruby-version: 3 # Not needed with a .ruby-version file
bundler-cache: true # runs 'bundle install' and caches installed gems automatically
- name: Generate CHANGELOG
env:
CHANGELOG_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
gem install github_changelog_generator
AUTH=$(echo $GITHUB_REPOSITORY | sed -e 's/\// /g' | awk '{print "--user " $1 " --project " $2}')
echo $AUTH
github_changelog_generator $AUTH --no-unreleased
- name: Update _version.py
env:
TAG: ${{ steps.tag_version.outputs.new_tag }}
run: |
folder=`dirname $(find . -name _version.py)`
echo "__version__ = \"$TAG\"" > $folder/_version.py
- name: Commit files
run: |
git config --local user.email "$GITHUB_EMAIL"
git config --local user.name "$GITHUB_USERNAME"
git commit -m "doc(CHANGELOG): update" -a
env:
GITHUB_USERNAME: breakthewall
GITHUB_EMAIL: joan.herisson@univ-evry.fr
- name: Push changes
uses: ad-m/github-push-action@master
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
branch: ${{ github.ref }}
- name: Update master branch
uses: ad-m/github-push-action@master
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
branch: master