selenzy-wrapper - rpSBML wrapper for selenzy tool

Install

From Conda

[sudo] conda install -c brsynth -c conda-forge -c bioconda selenzy_wrapper

Use

CLI

python -m selenzy_wrapper tests/data/pathway.xml selenzy.xml

As a Python module

from selenzy_wrapper import selenzy_pathway

pathway = rpPathway.from_rpSBML(infile='tests/data/pathway.xml')

selenzy_pathway(pathway=pathway)

pathway.to_rpSBML().write_to_file('selenzy.xml')

Tests

Please follow instructions below ti run tests:

cd tests
pytest -v

For further tests and development tools, a CI toolkit is provided in ci folder (see ci/README.md). -->

Authors

• Joan Hérisson

Acknowledgments

• Thomas Duigou

Licence

selenzy-wrapper is released under the MIT licence. See the LICENCE file for details.