Replace apparently missing np.product function. #31
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| name: StrainFacts | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| name: build (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ubuntu-latest | |
| env: | |
| DATADIR: data | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| build_type: [Release] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Checkout submodules | |
| run: git submodule update --init --recursive | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| mamba-version: "*" | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge,bioconda | |
| environment-file: conda_env.yaml | |
| activate-environment: strainfacts | |
| - name: pip install | |
| shell: bash -l {0} | |
| working-directory: ${{runner.workspace}}/StrainFacts/ | |
| run: | | |
| pip install -r requirements.pip | |
| pip install -e . | |
| - name: run tests | |
| shell: bash -l {0} | |
| working-directory: ${{runner.workspace}}/StrainFacts/ | |
| run: | | |
| make clean | |
| make test |