Fix: #281 v5.0.2 release note

docs/Makefile

@@ -18,7 +18,7 @@ help:
 download:
 #@( shell cp ../../mugqic/readme.md ./source/user_guide/pipelines/gp_readme.md)
 #	@$(shell curl -s https://bitbucket.org/mugqic/genpipes/downloads/?tab=tags | grep -m 1 "/mugqic/genpipes/get/" | grep -E -o ".{0,6}zip." | head -n 1 | cut -c1-5 > VERSION)
-	@$(shell curl -s https://bitbucket.org/mugqic/genpipes/downloads/ | grep "genpipes-4" |  grep -E -o ".{0,9}.gz"  |head -n 1 | cut -c1-5 > VERSION)
+	@$(shell curl -s https://bitbucket.org/mugqic/genpipes/downloads/ | grep "genpipes-5" |  grep -E -o ".{0,9}.gz"  |head -n 1 | cut -c1-5 > VERSION)
 
 usage:
 	@$(shell curl -s https://datahub-90-cw3.p.genap.ca/testCommands.txt > source/resources/testCommands.txt)

docs/VERSION

@@ -1 +1 @@
-5.0.1
+5.0.2

docs/source/development/release_notes.rst

@@ -13,6 +13,7 @@ The current release of GenPipes is |genpipes_version|.
 
    .. tab:: v5.x
 
+        * :ref:`GenPipes 5.0.2<docs_gp_relnote_5_0_2>` released on Dec 5, 2024
         * :ref:`GenPipes 5.0.1<docs_gp_relnote_5_0_1>` released on Sept 24, 2024
 
    .. tab:: v4.x

docs/source/development/relnotes/gp_5_0_2.rst

@@ -0,0 +1,65 @@
+:orphan:
+
+.. _docs_gp_relnote_5_0_2:
+
+.. spelling:word-list::
+
+     genpipes
+     rnammer
+
+GenPipes 5.0.2 Release Notes
+============================
+
+What's new? 
+-----------
+
+This is a bug-fix minor release : 
+
+* Core updates:
+
+  - Genpipes can now be loaded with `module load genpipes/5.0.2` in addition to `module load mugqic/genpipes/5.0.2`
+  - For users on `abacus`, the flag `force_mem_per_cpu` is now set by default
+  - Bug fixed in the `chunk_genpipes.sh` script
+  - Support script `csvToreadset.R` is now available for use
+
+* `AmpliconSeq <https://genpipes.readthedocs.io/en/genpipes-v5.0.2/user_guide/pipelines/gp_ampliconseq.html>`_
+
+  - `grep` call that was matching multiple samples in some cases is now fixed
+* `ChipSeq <https://genpipes.readthedocs.io/en/genpipes-v5.0.2/user_guide/pipelines/gp_chipseq.html>`_
+* 
+  - Re-introduced `SampleMetrics.tsv` report that was removed in v5.0.1, it now includes additional metrics (number of peaks, frip)
+  - Fixed missing input samples in IHEC metrics report
+  - MultiQC report improved - the samtools flagstat metrics included now reflect the pre-filtered alignment stats, giving a better idea of total vs. mapped reads
+
+* `DNA Sequencing Pipeline <https://bitbucket.org/mugqic/genpipes/src/5.0.2/pipelines/dnaseq/>`_
+
+  - bumped version of `pcgr` to 2.1.2
+
+* `RNA Sequencing Pipeline <https://bitbucket.org/mugqic/genpipes/src/5.0.2/pipelines/rnaseq/>`_
+
+  - Bumped version of `pcgr` to 2.1.2
+  - Improved handling of custom gtf files when using non-model genomes
+
+Quick! Where can I find it? I can't wait! 
+------------------------------------------
+
+* The latest release for GenPipes version 5.0.2 tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/genpipes-5.0.2.tar.gz
+
+* GenPipes is now distributed as a package via `pypi`: [https://pypi.org/project/c3g-genpipes/](https://pypi.org/project/c3g-genpipes/)
+
+* The module genpipes/5.0.2 is installed on Abacus (MGC), Béluga, Graham, Cedar and Narval Alliance clusters.
+
+* The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes
+
+* For latest GenPipes documentation, please refer to: https://genpipes.readthedocs.io/
+
+Where is the detailed ChangeLog? 
+================================= 
+
+A ChangeLog (`CHANGELOG.md <https://bitbucket.org/mugqic/genpipes/src/master/CHANGELOG.md>`_) is available in the archive as well as in the repository.
+
+Since we use git, there are many ways to get the details in many formats.
+
+One of our preferred ways is to use `a script <https://raw.github.com/sebhtml/ray/master/scripts/dump-ChangeLog.sh>`_ written by the author of the Ray assembler: Sébastien Boisvert, which lists the commits by tag and author. 
+
+We look forward to your feedback!