add FinalSync to sync nb and lb, push to run dashboard

workflows/freezeman/monitor.nf

@@ -63,6 +63,22 @@ process RunMultiQC {
     """
 }
 
+process FinalSync {
+    executor 'local'
+    errorStrategy = 'ignore'
+    maxForks 1
+
+    input:
+    tuple path(rundir), path(donefile)
+
+    """
+    rsync -av $rundir/report/multiqc_* /lb/robot/research/freezeman-processing/*/*/$rundir/report
+    curl -k -X POST https://dashrunr.c3g-app.sd4h.ca/update \\
+        -H "descrambler-key: \$(cat ~/assets/run-processing-update-headers)" \\
+        -H "Content-Type: application/json" -d @$rundir/report/multiqc_data/multiqc_data.json
+    """
+}
+
 process GenapUpload {
     tag { multiqc.flowcell }
     executor 'local'
@@ -171,7 +187,7 @@ workflow WatchFinish {
     // Upload to GenAP + Send end-of-processing email notification
     donefiles
     | map { donefile -> [donefile.getParent().getParent().getParent(), donefile] }
-    | RunMultiQC
+    | (RunMultiQC & FinalSync)
     | map { html, json -> [html, new MultiQC(json)] }
     | (GenapUpload & EmailAlertFinish)
 }