Feature modulegraph and cleanup

.editorconfig

@@ -0,0 +1,22 @@
+# Documentation: https://EditorConfig.org
+# Inspired by Django .editorconfig file
+
+root = true
+
+[*]
+indent_style = space
+indent_size = 4
+trim_trailing_whitespace = true
+end_of_line = lf
+insert_final_newline = true
+charset = utf-8
+
+[*.{yaml,yml}]
+indent_size = 2
+
+[*.md]
+trim_trailing_whitespace = true
+indent_size = 4
+
+[*.{diff,patch}]
+trim_trailing_whitespace = false

.gitignore

@@ -0,0 +1,32 @@
+### OS-specific
+.DS_Store
+
+### Editors
+*~
+\#*\#
+**/.vscode
+.$*
+
+### Byte-compiled files
+__pycache__
+*.pyc
+
+### Build output
+build
+*.egg-info
+
+### Reports
+.coverage
+.coverage.*
+.hypothesis/
+coverage.xml
+*.cover
+
+### Caches
+.*[cC]ache*
+
+### Notebooks
+.ipynb_checkpoints
+
+### Project-specific
+tmp/

.pre-commit-config.yaml

@@ -0,0 +1,39 @@
+default_language_version:
+  python: python3
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      # Machine-friendliness
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      # Repo quality
+      - id: check-added-large-files
+        args: [--enforce-all]
+      - id: forbid-submodules
+      - id: check-case-conflict
+      # - id: check-illegal-windows-names  TODO: reactivate once https://github.com/pre-commit/pre-commit-hooks/issues/1048 is fixed
+      - id: check-merge-conflict
+      - id: debug-statements
+      # Config file issues
+      - id: check-json
+      - id: check-toml
+      - id: check-yaml
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.6.3
+    hooks:
+      - id: ruff
+        args: [--fix, --exit-non-zero-on-fix]
+      - id: ruff-format
+
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.3.0
+    hooks:
+    - id: codespell
+      additional_dependencies:
+        - tomli
+
+ci:  # https://pre-commit.ci/
+  autoupdate_schedule: monthly

README.md

@@ -16,3 +16,13 @@ dependencies:
   - pip:
     - "git+https://github.com/calliope-project/ec_utils.git@v0.1.0"
 ```
+
+## Development
+
+We recommend using `mamba` for development.
+
+```bash
+mamba create -n ec_utils --file requirements/base.txt --file requirements/geo.txt --file requirements/dev.txt
+mamba activate ec_utils
+pip install --no-deps -e .
+```

pyproject.toml

@@ -0,0 +1,77 @@
+[build-system]
+build-backend = "setuptools.build_meta"
+requires = ["setuptools>=70.0"]
+
+[project]
+name = "ec_utils"
+authors = [
+    {name = "Tim Tröndle", email = "tim.troendle@usys.ethz.ch"},
+    {name = "Ivan Ruiz Manuel", email = "i.ruizmanuel@tudelft.nl"}
+]
+description = "Utility library to glue the ec_modules workflows"
+readme = "README.md"
+license = {file = "LICENSE"}
+# complete classifier list:
+# http://pypi.org/classifiers/
+classifiers = [
+  'Programming Language :: Python :: 3.8',
+  'Programming Language :: Python :: 3.9',
+  'Programming Language :: Python :: 3.10',
+  'Programming Language :: Python :: 3.11',
+  'Programming Language :: Python :: 3.12',
+]
+keywords = ['utilities', 'workflows']
+
+requires-python = ">=3.8"
+dynamic = ["dependencies", "version"]
+
+[project.urls]
+Homepage = "https://github.com/calliope-project/ec_utils"
+Repository = "https://github.com/calliope-project/ec_utils"
+Issues = "https://github.com/calliope-project/ec_utils/issues"
+
+[tool.setuptools]
+package-dir = {"" = "src"}
+
+[tool.setuptools.dynamic]
+version = {attr = "ec_utils.__version__"}
+dependencies = { file = ["requirements/base.txt"] }
+optional-dependencies.geo = { file = ["requirements/geo.txt"] }
+optional-dependencies.dev = { file = ["requirements/dev.txt"] }
+
+[tool.codespell]
+skip = 'tests/*.py,AUTHORS,*.shp,*.geojson'
+count = ''
+quiet-level = 3
+ignore-words-list = "socio-economic,manuel"
+
+[tool.ruff]
+
+[tool.ruff.lint]
+select = ["E", "F", "I", "W", "D", "PT", "C90", "UP"]
+exclude = [".eggs"]
+
+[tool.ruff.lint.isort]
+split-on-trailing-comma = false
+
+[tool.ruff.lint.per-file-ignores]
+"__init__.py" = ["E402", "F401", "D104"]
+"tests/**" = ["D100", "D103", "PT004"]
+
+[tool.ruff.lint.pydocstyle]
+convention = "google"
+
+[tool.ruff.lint.pycodestyle]
+ignore-overlong-task-comments = true
+
+[tool.ruff.format]
+exclude = [".*.egg-info", "requirements/**"]
+skip-magic-trailing-comma = true
+
+[tool.mypy]
+ignore_missing_imports = true
+
+[tool.pytest.ini_options]
+addopts = ["--import-mode=importlib"]
+pythonpath = ["src"]
+testpaths = ["tests"]

requirements/base.txt

@@ -0,0 +1,7 @@
+numpy
+scipy
+pydot
+pandera
+xarray
+networkx
+pycountry == 18.12.8

requirements/dev.txt

@@ -0,0 +1,4 @@
+ruff
+codespell
+pytest
+ipykernel

requirements/geo.txt

@@ -0,0 +1,3 @@
+geopandas
+rasterio
+rasterstats

src/ec_utils/__init__.py

@@ -0,0 +1 @@
+__version__ = "0.1.1"

eurocalliopelib/filters.py → src/ec_utils/filters.py

@@ -1,3 +1,6 @@
+"""Data standardisation functions."""
+
+
 def unit(value, unit, parenthesis=True):
     """Formats the numeric value of a unit into a string in a consistent way."""
     formatted = f"{value:,g} {unit}"