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Adding datapasta and its citation
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camilogarciabotero committed Aug 19, 2021
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3 changes: 2 additions & 1 deletion README.Rmd
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Expand Up @@ -24,14 +24,15 @@ library(kableExtra)
library(tidyr)
library(ggplot2)
library(forcats)
library(datapasta)
```

# Data layers for the phylogenetic recosntruction (Fig 2.B-D) of **Bacillus** spp.


## Data importing and processing

The first step in this analysis is importing the summarized output that was created using the `populate_script()` after selecting each prophage prediction using de `datapasta` package.
The first step in this analysis is importing the summarized output that was created using the `populate_script()` after selecting each prophage prediction using de `datapasta` package [@R-datapasta].

<details open>
<summary>Predicted prophages retrieved on 2021-02-19</summary>
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10 changes: 9 additions & 1 deletion README.md
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Expand Up @@ -14,7 +14,7 @@ rmarkdown and knitr packages were used to generate this report (Xie

The first step in this analysis is importing the summarized output that
was created using the `populate_script()` after selecting each prophage
prediction using de `datapasta` package.
prediction using de `datapasta` package (McBain et al. 2021).

<details open>
<summary>
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</div>

<div id="ref-R-datapasta" class="csl-entry">

McBain, Miles, Jonathan Carroll, Sharla Gelfand, Suthira Owlarn, and
Garrick Aden-Buie. 2021. *Datapasta: R Tools for Data Copy-Pasta*.
<https://github.com/milesmcbain/datapasta>.

</div>

<div id="ref-R-tibble" class="csl-entry">

Müller, Kirill, and Hadley Wickham. 2021. *Tibble: Simple Data Frames*.
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8 changes: 8 additions & 0 deletions packages.bib
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@@ -1,3 +1,11 @@
@Manual{R-datapasta,
title = {datapasta: R Tools for Data Copy-Pasta},
author = {Miles McBain and Jonathan Carroll and Sharla Gelfand and Suthira Owlarn and Garrick Aden-Buie},
note = {R package version 3.1.1},
url = {https://github.com/milesmcbain/datapasta},
year = {2021},
}

@Manual{R-dplyr,
title = {dplyr: A Grammar of Data Manipulation},
author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
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