Merge branch 'hotfix/1.6.1'

cancerit · May 9, 2016 · e7ca306 · e7ca306
2 parents ec28e2c + 0d82e44
commit e7ca306
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Showing 5 changed files with 8 additions and 5 deletions.
diff --git a/CHANGES.md b/CHANGES.md
@@ -1,3 +1,6 @@
+## 1.6.1
+* Replaced prerequestite test for Bio::DB::Sam with Bio::DB::HTS in setup.sh
+
 ## 1.6.0
 * Now uses UCSC defined types as opposed to genome/exome etc. WXS,WGS,AMPLICON,RNASEQ defined so far
 * Uses Bio::DB::HTS rather than Bio::DB::Sam - cram can be used
diff --git a/docs.tar.gz b/docs.tar.gz
diff --git a/lib/Sanger/CGP/CavemanPostProcessing.pm b/lib/Sanger/CGP/CavemanPostProcessing.pm
@@ -32,7 +32,7 @@ use Attribute::Abstract;
 use Data::Dumper;
 use base 'Exporter';
 
-our $VERSION = '1.6.0';
+our $VERSION = '1.6.1';
 our @EXPORT = qw($VERSION);
 
 const my $MATCH_CIG => 'M';

diff --git a/lib/Sanger/CGP/CavemanPostProcessor.pm b/lib/Sanger/CGP/CavemanPostProcessor.pm
@@ -32,7 +32,7 @@ use Attribute::Abstract;
 use Data::Dumper;
 use base 'Exporter';
 
-our $VERSION = '1.6.0';
+our $VERSION = '1.6.1';
 our @EXPORT = qw($VERSION);
 
 const my $MATCH_CIG => 'M';

diff --git a/setup.sh b/setup.sh
@@ -95,9 +95,9 @@ if [[ "x$CGPVCF" == "x" ]] ; then
   exit 1;
 fi
 
-BIODBSAM=`perl -le 'eval "require $ARGV[0]" and print $ARGV[0]->VERSION' Bio::DB::Sam`
-if [[ "x$BIODBSAM" == "x" ]] ; then
-  echo "PREREQUISITE: Please install Bio::DB::Sam before proceeding"
+BIODBHTS=`perl -le 'eval "require $ARGV[0]" and print $ARGV[0]->VERSION' Bio::DB::HTS`
+if [[ "x$BIODBHTS" == "x" ]] ; then
+  echo "PREREQUISITE: Please install Bio::DB::HTs before proceeding"
   exit 1;
 fi