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stevencarlislewalker committed Dec 8, 2023
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Showing 1 changed file with 6 additions and 12 deletions.
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Expand Up @@ -195,19 +195,13 @@ Here we zoom into parts of the architectural diagram to illustrate the

Simulating from this model can be done like so.

si$simulator()$report()
(si$simulator()$report()
|> rename(prevalence = value)
|> ggplot()
+ geom_line(aes(time, prevalence))
)

## matrix time row col value
## 2 I 1 0 0 1.247500
## 3 I 2 0 0 1.555484
## 4 I 3 0 0 1.938307
## 5 I 4 0 0 2.413491
## 6 I 5 0 0 3.002301
## 7 I 6 0 0 3.730342
## 8 I 7 0 0 4.628139
## 9 I 8 0 0 5.731624
## 10 I 9 0 0 7.082401
## 11 I 10 0 0 8.727601
![](/Users/stevenwalker/Development/macpan2/README_files/figure-markdown_strict/unnamed-chunk-7-1.png)

#### (2d) Calibrating Models in the TMB Engine

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