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python code for running NP (multi-shank) spike sorting on a linux-based SLURM cluster

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carlacodes/neuropixels_sort

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spike-sorting for 4-shank neuropixels using kilosort4

n.b. this repository is a work in progress and builds upon my work with Jules Lebert to design an automated spike sorting pipeline for microtungsten and 4-shank Neuropixels probes.

  1. install spikeinterface and kilosort4 in a python 3.9 conda environment (via environment.yml)
  2. change the relevant parameters in /params
  3. run rat_robot_kilosort4.py as a test example

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python code for running NP (multi-shank) spike sorting on a linux-based SLURM cluster

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