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Update 03-antiSMASHdb-MiBiG.md
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cambie el tamaño de las imagenes de la parte de python
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andrespan authored Aug 22, 2024
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12 changes: 6 additions & 6 deletions _episodes/03-antiSMASHdb-MiBiG.md
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Expand Up @@ -111,7 +111,7 @@ data
{: .language-python}

<a href="{{ page.root }}/fig/21-08-24-chapter9-table.png">
<img src="{{ page.root }}/fig/21-08-24-chapter9-table.png" alt="a dataframe variable the content of the Streptococcus predicted BGC" />
<img src="{{ page.root }}/fig/21-08-24-chapter9-table.png" alt="a dataframe variable the content of the Streptococcus predicted BGC" width="800" />
</a>

Now, group the data by the variables Species and BGC type:
Expand All @@ -127,7 +127,7 @@ occurences
{: .language-python}

<a href="{{ page.root }}/fig/21-08-24-chapter9-occurences.png">
<img src="{{ page.root }}/fig/21-08-24-chapter9-occurences.png" alt="the content of the ocurrences grouped by species column" />
<img src="{{ page.root }}/fig/21-08-24-chapter9-occurences.png" alt="the content of the ocurrences grouped by species column" width="500"/>
</a>

Let's see our first visualization of the BGC content on a heatmap.
Expand All @@ -141,7 +141,7 @@ plt.show()
{: .language-python}

<a href="{{ page.root }}/fig/21-08-24-chapter9-heatmap.png">
<img src="{{ page.root }}/fig/21-08-24-chapter9-heatmap.png" alt="visualization of the BGC content on a heatmap." />
<img src="{{ page.root }}/fig/21-08-24-chapter9-heatmap.png" alt="visualization of the BGC content on a heatmap." width="800"/>
</a>


Expand All @@ -156,7 +156,7 @@ plt.show()
{: .language-python}

<a href="{{ page.root }}/fig/21-08-24-chapter9.dotplot.png">
<img src="{{ page.root }}/fig/21-08-24-chapter9.dotplot.png" alt="visualization of the BGC content of S. agalactiae. on a sctterplot" />
<img src="{{ page.root }}/fig/21-08-24-chapter9.dotplot.png" alt="visualization of the BGC content of S. agalactiae. on a sctterplot" width="800"/>
</a>

Finally, let's restrict ourselves to BGC predicted less than 200 times.
Expand All @@ -172,7 +172,7 @@ plt.show()
{: .language-python}

<a href="{{ page.root }}/fig/21-08-24-chapter9.dotplot2.png">
<img src="{{ page.root }}/fig/21-08-24-chapter9.dotplot2.png" alt="visualization of the BGC content on a scatterplot" />
<img src="{{ page.root }}/fig/21-08-24-chapter9.dotplot2.png" alt="visualization of the BGC content on a scatterplot" width="800"/>
</a>

~~~
Expand All @@ -184,6 +184,6 @@ plt.show()
{: .language-python}

<a href="{{ page.root }}/fig/21-08-24-chapter9-pivot-filtered.png">
<img src="{{ page.root }}/fig/21-08-24-chapter9-pivot-filtered.png" alt="filtered heatmap " />
<img src="{{ page.root }}/fig/21-08-24-chapter9-pivot-filtered.png" alt="filtered heatmap " width="800"/>
</a>

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