Skip to content

Commit

Permalink
Update setup.md
Browse files Browse the repository at this point in the history
  • Loading branch information
Czirion authored Sep 29, 2023
1 parent 7d9d60e commit 153fd9d
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions setup.md
Original file line number Diff line number Diff line change
Expand Up @@ -30,11 +30,11 @@ If you are not in a Data Carpentry Workshop, the software you need is listed in

| Software | Version | Manual | Available for | Description |
| -------- | ------------ | ------ | ------------- | ----------- |
| [Prokka](https://github.com/tseemann/prokka) | 1.14.6 | [GitHub](https://github.com/tseemann/prokka#invoking-prokka) | Linux, MacOC, Windows | Bacterial, archaeal and viral assembly annotation. |
|[ncbi-genome-download](https://github.com/kblin/ncbi-genome-download) |version |[GitHub](https://github.com/kblin/ncbi-genome-download#usage)| Downloading genomes from the NCBI.|
|[Anvi'o](https://anvio.org/)|version |[Pangenomics Workflow Manual](https://merenlab.org/2016/11/08/pangenomics-v2/)|Linux & MacOS| *multi-omics* analysis including Pangenomics.|
|[GET_HOMOLOGUES](https://github.com/eead-csic-compbio/get_homologues)|version|[GitHuB](http://eead-csic-compbio.github.io/get_homologues/manual/)|Available for| Sequence clustering.|
|[PPanGGOLiN](https://github.com/labgem/PPanGGOLiN)|version |[GitHub Wiki](https://github.com/labgem/PPanGGOLiN/wiki)|Available for| Pangenomics.|
| [Prokka](https://github.com/tseemann/prokka) | 1.14.6 | [GitHub](https://github.com/tseemann/prokka#invoking-prokka) | Linux, MacOC, Windows | Bacterial, archaeal and viral assembly annotation |
|[ncbi-genome-download](https://github.com/kblin/ncbi-genome-download) | version | [GitHub](https://github.com/kblin/ncbi-genome-download#usage) | Downloading genomes from the NCBI |
|[Anvi'o](https://anvio.org/)| version |[Pangenomics Workflow Manual](https://merenlab.org/2016/11/08/pangenomics-v2/)|Linux & MacOS| *multi-omics* analysis including Pangenomics|
|[GET_HOMOLOGUES](https://github.com/eead-csic-compbio/get_homologues)|version|[GitHuB](http://eead-csic-compbio.github.io/get_homologues/manual/)|Available for| Sequence clustering|
|[PPanGGOLiN](https://github.com/labgem/PPanGGOLiN)|version |[GitHub Wiki](https://github.com/labgem/PPanGGOLiN/wiki)|Available for| Pangenomics |


### Option A: Using the lessons with Amazon Web Services (AWS)
Expand Down

0 comments on commit 153fd9d

Please sign in to comment.