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Update setup.md
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Czirion authored Sep 29, 2023
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Expand Up @@ -132,7 +132,7 @@ To make a [Conda](https://conda.io/projects/conda/en/latest/index.html) environm
> See the video tutorial, [installing Miniconda3 on WSL Ubuntu](https://youtu.be/owQgZoE-GrY)
{: .solution}

#### NCBI-genome-download installation
#### **NCBI-genome-download installation**

There are two ways to install this package. The first one is with `pip`. It is recommended to upgrade the `pip` version to the newest one.
Pip installation:
Expand All @@ -151,7 +151,7 @@ conda install -c bioconda ncbi-genome-download
{: .language-bash}


#### Prokka installation
#### **Prokka installation**

Conda installation:
If you use [Conda](https://conda.io/docs/install/quick.html)
Expand All @@ -171,7 +171,7 @@ $HOME/prokka/bin/prokka --setupdb
You can test your installation by typing `prokka` and it should display its help screen.


#### Anvi'o installation
#### **Anvi'o installation**
Options:
* Install a stable release of anvi’o on a Mac, Linux, or Windows-running computer (best option for end users).
* Use anvi’o from the active development branch (best option for developers).
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