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Exercise2-commands-style 02-downloading-genomes.md
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paumayell authored Apr 9, 2024
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Expand Up @@ -305,21 +305,21 @@ downloading strain 2603V/R
> Let's further practice using loops to download genomes in batches.
> For the sentences below, select only the necessary and their correct order to achieve the desired output:
>
> A) ncbi-genome-download --formats fasta --genera "Streptococcus agalactiae" -S strain -o agalactiae_strain bacteria
> A) `ncbi-genome-download --formats fasta --genera "Streptococcus agalactiae" -S strain -o agalactiae_strain bacteria`
>
> B) cat TettlinList.txt | while read strain
> B) `cat TettlinList.txt | while read strain`
>
> C) done
> C) `done`
>
> D) echo Downloading line
> D) `echo Downloading line`
>
> E) cat TettlinList.txt | while read line
> E) `cat TettlinList.txt | while read line`
>
> F) do
> F) `do`
>
> G) ncbi-genome-download --formats fasta --genera "Streptococcus agalactiae" -S $strain -o agalactiae_$strain bacteria
> G) `ncbi-genome-download --formats fasta --genera "Streptococcus agalactiae" -S $strain -o agalactiae_$strain bacteria`
>
> H) echo Downloading $strain
> H) `echo Downloading $strain`
>
>
> **Desired Output**
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