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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 130 45

Repositories

Showing 10 of 95 repositories
  • cowwid Public

    Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

    cbg-ethz/cowwid’s past year of commit activity
    Jupyter Notebook 7 0 1 0 Updated Sep 9, 2024
  • VILOCA Public

    VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

    cbg-ethz/VILOCA’s past year of commit activity
    Python 14 GPL-3.0 0 0 0 Updated Sep 6, 2024
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 130 Apache-2.0 45 30 (2 issues need help) 4 Updated Sep 6, 2024
  • LongSom Public

    LongSom tool for long-reads

    cbg-ethz/LongSom’s past year of commit activity
    Python 4 0 0 0 Updated Sep 6, 2024
  • smallgenomeutilities Public

    smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

    cbg-ethz/smallgenomeutilities’s past year of commit activity
    Python 10 GPL-2.0 7 4 2 Updated Sep 3, 2024
  • scDEF Public

    Deep exponential families for single-cell data.

    cbg-ethz/scDEF’s past year of commit activity
    Python 20 1 0 0 Updated Sep 3, 2024
  • Jnotype Public

    Exploratory analysis of binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 2 MIT 0 6 2 Updated Aug 22, 2024
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 2 Updated Aug 19, 2024
  • SCATrEx Public

    Map single-cell transcriptomes to copy number evolutionary trees.

    cbg-ethz/SCATrEx’s past year of commit activity
    Python 13 1 3 0 Updated Aug 18, 2024
  • CTC-SCITE Public

    Computational method and analyses to study the clonality of circulating tumor cell clusters

    cbg-ethz/CTC-SCITE’s past year of commit activity
    C++ 2 GPL-3.0 1 3 0 Updated Aug 14, 2024
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