py3.12 support (#169)

* py3.12 support, fixes #168

.github/workflows/constraints.txt

@@ -1,5 +1,5 @@
-pip==23.0.1
-nox==2022.11.21
-nox-poetry==1.0.2
-poetry==1.3.2
-virtualenv==20.15.0
+pip==24.1.2
+nox==2024.4.15
+nox-poetry==1.0.3
+poetry==1.7.1
+virtualenv==20.26.3

.github/workflows/tests.yml

@@ -7,17 +7,36 @@ on:
     branches:
       - main
   pull_request:
+  workflow_dispatch:
+    inputs:
+      run_full_matrix:
+        description: 'Run the full matrix of Python versions'
+        required: false
+        default: 'false'
 
 jobs:
   tests:
-    name: ${{ matrix.session }} ${{ matrix.python }} / ${{ matrix.os }}
+    name: ${{ matrix.session }} ${{ matrix.python-version }} / ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
+        os: [ubuntu-latest]
+        session: [tests]
+        python-version: ['3.10']
         include:
-          - { python: "3.10", os: "ubuntu-latest", session: "tests" }
-          #- { python: "3.9", os: "ubuntu-latest", session: "tests" }
+          - python-version: '3.9'
+            os: ubuntu-latest
+            session: tests
+            if: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.run_full_matrix == 'true' }}
+          - python-version: '3.11'
+            os: ubuntu-latest
+            session: tests
+            if: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.run_full_matrix == 'true' }}
+          - python-version: '3.12'
+            os: ubuntu-latest
+            session: tests
+            if: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.run_full_matrix == 'true' }}
     env:
       NOXSESSION: ${{ matrix.session }}
       FORCE_COLOR: "1"
@@ -27,10 +46,10 @@ jobs:
       - name: Check out the repository
         uses: actions/checkout@v3
 
-      - name: Set up Python ${{ matrix.python }}
+      - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v3
         with:
-          python-version: ${{ matrix.python }}
+          python-version: ${{ matrix.python-version }}
 
       - name: Upgrade pip
         run: |
@@ -49,6 +68,7 @@ jobs:
       - name: Install Poetry
         run: |
           pipx install --pip-args=--constraint=${PWD}/.github/workflows/constraints.txt poetry
+          pipx inject --pip-args=--constraint=${PWD}/.github/workflows/constraints.txt poetry poetry-plugin-export
           poetry --version
 
       - name: Install Nox
@@ -95,7 +115,7 @@ jobs:
           export SCIDA_TESTDATA_PATH=${{ env.SCIDA_TESTDATA_PATH }}
           echo "test data path: $SCIDA_TESTDATA_PATH"
           echo "test data path content: $(ls $SCIDA_TESTDATA_PATH)"
-          nox --python=${{ matrix.python }}
+          nox --python=${{ matrix.python-version }}
 
       - name: Upload coverage data
         if: always() && matrix.session == 'tests'
@@ -110,6 +130,7 @@ jobs:
         with:
           name: docs
           path: docs/_build
+    continue-on-error: ${{ github.event.inputs.run_full_matrix == 'false' && matrix.full_matrix != true }}
 
   coverage:
     runs-on: ubuntu-latest

README.md

@@ -16,7 +16,7 @@ This tool uses dask, allowing analysis to scale up from your personal computer t
 
 ## Requirements
 
-- Python 3.9, 3.10, 3.11
+- Python 3.9, 3.10, 3.11, 3.12
 
 
 ## Documentation

docs/install.md

@@ -2,7 +2,7 @@
 
 ## Installation
 
-scida can be installed via [PyPI](https://pypi.org/). scida requires a Python version 3.9, 3.10 or 3.11.
+scida can be installed via [PyPI](https://pypi.org/). scida requires a Python version 3.9, 3.10, 3.11 or 3.12.
 
 ??? tip "Encapsulating packages"
     We recommend encapsulating your python environments. For example using [anaconda](https://www.anaconda.com/) or [virtualenv](https://virtualenv.pypa.io/en/latest/).

noxfile.py

@@ -1,8 +1,12 @@
 from pathlib import Path
 
-from nox_poetry import Session, session
+# waiting for https://github.com/python-poetry/poetry-plugin-export/pull/286
+# for now have to fall back to nox rather than nox_poetry
+from nox import Session, session
 
-python_versions = ["3.11", "3.10", "3.9"]
+# from nox_poetry import Session, session
+
+python_versions = ["3.12", "3.11", "3.10", "3.9"]
 python_dflt = "3.10"