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cdanielmachado committed Apr 25, 2023
1 parent b55cd63 commit 30d71a5
Showing 1 changed file with 1 addition and 5 deletions.
6 changes: 1 addition & 5 deletions carveme/cli/benchmark.py
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import pandas as pd
from reframed import load_cbmodel, set_default_solver
from reframed import load_cbmodel
from carveme.reconstruction.utils import load_media_db
from carveme.reconstruction.benchmark import benchmark_biolog, benchmark_essentiality, mcc
from carveme import project_dir
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parser.add_argument('--species', dest='species', help="Benchmark only one species.")

parser.add_argument('--solver', help="Select MILP solver. Available options: cplex [default], gurobi.")

args = parser.parse_args()

if args.solver:
set_default_solver(args.solver)

benchmark(rebuild=(not args.no_rebuild),
biolog=(not args.no_biolog),
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