Make ArrayWrapper pickleable #86
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test | |
| on: | |
| - pull_request | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: | |
| - ubuntu-latest | |
| - windows-latest | |
| - macos-latest | |
| python-version: | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| numpy-version: | |
| - "<2" | |
| - ">=2" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Prerequisites (Linux) | |
| if: matrix.platform == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get -y install tabix | |
| - name: Install | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install "numpy${{ matrix.numpy-version }}" | |
| python -m pip install -r requirements_dev_base.txt -r requirements_test.txt -r requirements_dev_optional.txt -r requirements_rtfd.txt | |
| python -m pip install -e . | |
| - name: Lint | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 allel --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 allel --count --exit-zero --max-line-length=127 --statistics | |
| - name: Test | |
| run: | | |
| pytest -v allel | |
| # - name: Test with doctest | |
| # if: matrix.platform == 'ubuntu-latest' && matrix.python-version == '3.12' && matrix.numpy-version == '>=2' | |
| # run: | | |
| # pytest -v --cov=allel --doctest-modules allel | |
| # coverage report -m | |
| # - name: Build docs | |
| # if: matrix.platform == 'ubuntu-latest' && matrix.python-version == '3.12' && matrix.numpy-version == '>=2' | |
| # run: | | |
| # cd docs && make html |