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This repository has been archived by the owner on Aug 17, 2022. It is now read-only.

Collection of script-style utility functions for the NT/NR search mapping research.

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chanzuckerberg/ncbi-tool-search

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  • Unpolished script-style utility and example functions used in NCBI NT/NR research and experimentation to match sequences by accession number to smaller files.

Archived

This repository was created for experimental purposes and is no longer maintained or used.

Usage

  • Link to Usage and Development Notes and Project Write-Up: https://czi.quip.com/rwBgAebQg2Fa

  • Folder structure for search utility functions:

    • accession_extraction.go
      • Utility functions for extracting accession numbers from files in remote directories.
    • main.go
      • Barebones entry point.
    • prefix_extraction.go
      • Functions for simply getting lists of all the prefixes found in the files.
    • prefix_search.go
      • Main flow used for going from accession numbers to hits/matches found in smaller files in target search directories.
    • range_reduction.go
      • Functions for formatting accession numbers and reformatting point values into ranges.
    • util.go
      • Utility functions for error handling and such.

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Collection of script-style utility functions for the NT/NR search mapping research.

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