NiftyOne

NiftyOne is a platform for bulk visualization of large-scale neuroimaging datasets. It is built with FiftyOne.

Installation

For stability, NiftyOne should be installed in it's own environment. For example, to install using python 3.10:

conda create -y -n niftyone python=3.10
conda activate niftyone

pip install -U pip
pip install git+https://github.com/childmindresearch/niftyone.git

Usage

1. Generate figures for each participant

niftyone bids_dir output_dir participant --workers 8

2. Collect participant figures into a FiftyOne dataset

niftyone bids_dir output_dir group

3. Launch FiftyOne app

niftyone bids_dir output_dir launch