👷 Launch runs for regression tests from CI (1/2)

[shnizzedy]

Related to

Related to FCP-INDI/C-PAC#1904 by @amygutierrez

Part of a series toward automating regression testing

1. this PR
2. 📦️ Restore WORKDIR to final-stage Dockerfiles FCP-INDI/C-PAC#1999 + 👷 Launch runs for regression tests from CI (2/2) FCP-INDI/C-PAC#2001

Description

This PR updates the logic of these SLURM scripts to facilitate automated launches on an HPC from GitHub Actions. A more detailed explanation can be found in the updated README.

Technical details

• This is just part of the solution to ✨ Automate Regression Testing FCP-INDI/C-PAC#1904. With these changes, we

  1. run the updated code on downsampled code on a HPC
  2. report back success or failure of each run to a GitHub check

  Subsequent PRs to FCP-INDI/C-PAC + cmi-dair/slurm_testing + FCP-INDI/regtest-runlogs + amygutierrez/regression_dashboard will automate correlating the new run to a previous run (for the regression test) and reporting back those results

Tests

I've been running all these changes on bridges-2 via CI on my forks of these repos to test.

Screenshots

When runs fail, the checks should show red like https://github.com/FCP-INDI/C-PAC/assets/5974438/c2613976-a1d7-4237-a8c1-2015fe1d674c

In any case, logs should be available on GitHub like this.

Checklist

• My pull request has a descriptive title (not a vague title like Update index.md).
• My pull request targets the main branch of the repository.
• My commit messages follow best practices.
• My code follows the established code style of the repository.
• I added tests for the changes I made (if applicable).
• I updated the changelog.
• I added or updated documentation (if applicable).
• I tried running the project locally and verified that there are no visible errors.

Developer Certificate of Origin

Developer Certificate of Origin

Developer Certificate of Origin
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Everyone is permitted to copy and distribute verbatim copies of this
license document, but changing it is not allowed.


Developer's Certificate of Origin 1.1

By making a contribution to this project, I certify that:

(a) The contribution was created in whole or in part by me and I
    have the right to submit it under the open source license
    indicated in the file; or

(b) The contribution is based upon previous work that, to the best
    of my knowledge, is covered under an appropriate open source
    license and I have the right under that license to submit that
    work with modifications, whether created in whole or in part
    by me, under the same open source license (unless I am
    permitted to submit under a different license), as indicated
    in the file; or

(c) The contribution was provided directly to me by some other
    person who certified (a), (b) or (c) and I have not modified
    it.

(d) I understand and agree that this project and the contribution
    are public and that a record of the contribution (including all
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[sgiavasis]

YAY.