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@chinese-quartet

Chinese Quartet

The Chinese Quartet genome reference materials were jointly developed by the National Institute of Metrology, Beijing and Fudan University, Shanghai, China.
README.md

Main Website

Pipelines

For DNAseq

Quartet DSeQC Report is a quality assessment tool for WGS/WES data. It supports two format: Fastq and vcf. And it contains three subcommands: fq-workflow, vcf-workflow and report. The fq-workflow command takes raw reads (in FASTQ format), produces a set of qc result files from them.

If you would like to analyze your data on your own server, please follow the document

If not, you can analyze your data on our cloud platform Quartet Data Portal

For RNAseq

Quartet RSeQC Report is a quality assessment tool for RNA-seq data. It contains two subcommands: workflow and report. The workflow command takes raw reads (in FASTQ format), produces a set of qc result files from them (More details on RNA-Seq QC for Quartet). and you can use report command to report the results finally.

If you would like to analyze your data on your own server, please follow the document

If not, you can analyze your data on our cloud platform Quartet Data Portal

For Proteomics

If you would like to analyze your data on your own server, please follow the document

For Metabolomics

If you would like to analyze your data on your own server, please follow the document

Pinned Loading

  1. metadata-validator metadata-validator Public

    [Experimental] A generator for metadata templates and a validator for the metadata of the Quartet project.

    Python 1

  2. docs.chinese-quartet.org docs.chinese-quartet.org Public

    Docs and discussion area for chinese quartet project.

    3 4

  3. quartet-dseqc-report quartet-dseqc-report Public

    Visualizes Quality Control(QC) Results for Quartet DNA-Seq Data.

    HTML 1 1

  4. quartet-rseqc-report quartet-rseqc-report Public

    Visualizes Quality Control(QC) Results for Quartet RNA-Seq Data.

    JavaScript 1

  5. quartet-protqc-report quartet-protqc-report Public

    Visualizes Quality Control(QC) Results for Quartet Proteomics Data.

    JavaScript 2 2

  6. quartet-metqc-report quartet-metqc-report Public

    Visualizes Quality Control(QC) Results for Quartet Metabolomics Data.

    JavaScript 2 2

Repositories

Showing 10 of 11 repositories
  • docs.chinese-quartet.org Public

    Docs and discussion area for chinese quartet project.

    chinese-quartet/docs.chinese-quartet.org’s past year of commit activity
    3 MIT 4 0 0 Updated Oct 14, 2024
  • Quartet-RNA-QC-report Public
    chinese-quartet/Quartet-RNA-QC-report’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 5, 2024
  • Quartet-DNA-QC-report Public
    chinese-quartet/Quartet-DNA-QC-report’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 3, 2024
  • quartet-dseqc-report Public

    Visualizes Quality Control(QC) Results for Quartet DNA-Seq Data.

    chinese-quartet/quartet-dseqc-report’s past year of commit activity
    HTML 1 EPL-2.0 1 0 1 Updated Oct 11, 2023
  • quartet-rseqc-report Public

    Visualizes Quality Control(QC) Results for Quartet RNA-Seq Data.

    chinese-quartet/quartet-rseqc-report’s past year of commit activity
    JavaScript 1 EPL-2.0 0 0 1 Updated Sep 24, 2023
  • qdp-visualizer Public

    A visualization tool for quartet reference datatasets

    chinese-quartet/qdp-visualizer’s past year of commit activity
    R 0 0 0 0 Updated Aug 6, 2023
  • quartet-multiomics-ratio Public

    Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials

    chinese-quartet/quartet-multiomics-ratio’s past year of commit activity
    0 0 0 0 Updated Jul 24, 2023
  • quartet-protqc-report Public

    Visualizes Quality Control(QC) Results for Quartet Proteomics Data.

    chinese-quartet/quartet-protqc-report’s past year of commit activity
    JavaScript 2 EPL-2.0 2 0 0 Updated Jun 20, 2023
  • metadata-validator Public

    [Experimental] A generator for metadata templates and a validator for the metadata of the Quartet project.

    chinese-quartet/metadata-validator’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 13, 2023
  • .github Public
    chinese-quartet/.github’s past year of commit activity
    0 0 0 0 Updated Jun 2, 2023
View all repositories

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