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SURPI v1.0.17
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@sfederman sfederman released this 07 Jul 21:55
· 33 commits to master since this release
v1.0.17
cbd9748

• Added documentation
• Added SURPI installer
• Added scripts to create all necessary reference databases
• Updated license to BSD 2 clause
• Removed many extraneous command line options - now config file is required for SURPI runs
• separated SNAP edit distance for human subtraction and NT alignment into separate config file parameters
• Added check after preprocessing step to stop pipeline if null FASTQ file
• bugfixes
• Added additional software dependency (GNU parallel), which is used to parallelize and throttle some SURPI processes
• Updated SURPI_installer.sh to install the correct SURPI version (1.0.17)

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