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SURPI v1.0.9
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@sfederman sfederman released this 01 May 08:13
· 111 commits to master since this release
v1.0.9
9a7f7b5

• added command line option (-v) for verification mode. In this mode, SURPI will verify all dependencies, reference data, and FASTQ file (if desired). The actual pipeline is not run - only verification occurs.

This same verification is also done at the beginning of every pipeline run. Results are within the log file generated by the pipeline.

• adjusted SNAP - nt to remove intermediate .sam files upon completion. These files were not deleted by the recently added compare_multiple_sam.py method.

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