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docs: Update changelog
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alumi committed May 23, 2024
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# Change Log

## [Unreleased]

### Changed
* Use aset instead of aset-* for performance [#286](https://github.com/chrovis/cljam/pull/286)
* Misc performance tuning for cljam.algo.depth [#287](https://github.com/chrovis/cljam/pull/287)
* Disable :missing-docstring linter for test code [#288](https://github.com/chrovis/cljam/pull/288)
* Use ByteBuffer wrapper instead of LSB protocol [#290](https://github.com/chrovis/cljam/pull/290)
* Rewrite TwoBitWriter using FileChannel and ByteBuffer [#291](https://github.com/chrovis/cljam/pull/291)
* Replace remaining LSB protocol implementations with ordinary functions [#293](https://github.com/chrovis/cljam/pull/293)
* Remove nth's linear search overhead in BCF reader [#294](https://github.com/chrovis/cljam/pull/294)

### Fixed
* Fix/apply lint [#269](https://github.com/chrovis/cljam/pull/269)
* Fix/vcf float case insensitive [#272](https://github.com/chrovis/cljam/pull/272)
* Fix/additional coding style [#279](https://github.com/chrovis/cljam/pull/279)
* Fix/shadowing var [#281](https://github.com/chrovis/cljam/pull/281)
* Fix/add doc string [#282](https://github.com/chrovis/cljam/pull/282)
* Remove extra parens around static field references [#300](https://github.com/chrovis/cljam/pull/300)
* Update dependencies [#310](https://github.com/chrovis/cljam/pull/310)

### Added
* Add function for unphasing genotypes [#275](https://github.com/chrovis/cljam/pull/275)
* Support explicit first phasing indicator for VCF genotypes [#276](https://github.com/chrovis/cljam/pull/276)
* Add validator for writing vcf. [#277](https://github.com/chrovis/cljam/pull/277)
* Add validator for writing sam. [#278](https://github.com/chrovis/cljam/pull/278)
* Implementing rANS4x8 decoder toward CRAM support [#297](https://github.com/chrovis/cljam/pull/297)
* Add CRAM reader (alpha) [#302](https://github.com/chrovis/cljam/pull/302)
* Misc performance improvements for CRAM reader [#304](https://github.com/chrovis/cljam/pull/304)
* Index-based random access for CRAM reader [#306](https://github.com/chrovis/cljam/pull/306)
* Support reading CRAM files with embedded references [#307](https://github.com/chrovis/cljam/pull/307)
* Automatic read name generation for CRAM records [#308](https://github.com/chrovis/cljam/pull/308)
* Support for CRAM beta coding [#309](https://github.com/chrovis/cljam/pull/309)
* Support for reading alignments in specific region without CRAI index file [#311](https://github.com/chrovis/cljam/pull/311)

## [0.8.4] - 2023-04-12

### Changed
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