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totakke committed Nov 14, 2018
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## [Unreleased]

### BREAKING

* Strand representation is changed to keyword (`:forward`, `:reverse`).
* Chromosome name normalization is decoupled from BED i/o.
* Pileup module is entirely rewritten. See [#140](https://github.com/chrovis/cljam/pull/140) for more information.

### Added

* Support extra fields for VCF/BCF meta info. [#135](https://github.com/chrovis/cljam/pull/135)
* Character escaping support for string fields in VCF meta info. [#138](https://github.com/chrovis/cljam/pull/138)
* GFF3 I/O. [#143](https://github.com/chrovis/cljam/pull/143)
* Add basic reader/writer support for WIG. [#145](https://github.com/chrovis/cljam/pull/145)
* Add a reader for bigWig format. [#149](https://github.com/chrovis/cljam/pull/149)

### Changed

* Rewrite pileup module. [#140](https://github.com/chrovis/cljam/pull/140)
* Use :forward/:reverse/nil as values for the key ':strand'. [#144](https://github.com/chrovis/cljam/pull/144)
* Improve performance of TwoBitReader. [#153](https://github.com/chrovis/cljam/pull/153)
* Remove normalization of chromosome names from BED reader. [#154](https://github.com/chrovis/cljam/pull/154)

### Fixed

* Fix options of cljam.algo.pileup/pileup. [#146](https://github.com/chrovis/cljam/pull/146)
* Fix a bug in `cljam.algo.pileup/pileup`. [#148](https://github.com/chrovis/cljam/pull/148)
* Fix some fields of cljam.io.pileup LocusPile and PileupBase. [#151](https://github.com/chrovis/cljam/pull/151)

## [0.6.0] - 2018-06-22

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