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Pileup without options #54

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merged 2 commits into from
Apr 19, 2017
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ayamada
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@ayamada ayamada commented Apr 18, 2017

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codecov-io commented Apr 18, 2017

Codecov Report

Merging #54 into master will increase coverage by 0.47%.
The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #54      +/-   ##
==========================================
+ Coverage   73.36%   73.84%   +0.47%     
==========================================
  Files          56       56              
  Lines        3293     3292       -1     
  Branches      329      334       +5     
==========================================
+ Hits         2416     2431      +15     
+ Misses        548      527      -21     
- Partials      329      334       +5
Impacted Files Coverage Δ
src/cljam/pileup.clj 100% <100%> (+14.28%) ⬆️
src/cljam/util/sam_util.clj 84.01% <0%> (+0.81%) ⬆️
src/cljam/pileup/mpileup.clj 88.7% <0%> (+7.25%) ⬆️
src/cljam/util/chromosome.clj 100% <0%> (+9.67%) ⬆️

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@@ -15,6 +15,8 @@
{:n-threads 0})

(defn pileup
([bam-reader rname]
(plp/pileup bam-reader rname))
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(pileup bam-reader rname {}) would be better, I think.

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Thanks to your review.
I fixed it by 64eeb38 .

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@alumi alumi left a comment

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LGTM 👍 Thanks!

@totakke totakke merged commit e365309 into chrovis:master Apr 19, 2017
@ayamada ayamada deleted the fix/pileup-without-option branch April 28, 2017 15:13
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4 participants