Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ambr and CanCoGeN schema updates #372

Merged
merged 2 commits into from
Jan 24, 2023
Merged

ambr and CanCoGeN schema updates #372

merged 2 commits into from
Jan 24, 2023

Conversation

ddooley
Copy link
Collaborator

@ddooley ddooley commented Jan 20, 2023

Update doesn't affect DH code itself.

Template Name Template Versionx.y.z x changes (field) y changes (values/IDs) z changes (defs/formats/examples)
CanCOGeN (SC2) 2.1.2 "travel history availability" field added travel history availablity picklist added travel history availability definitions, guidance, examples added. Values for this field export to "PH_TRAVEL" in NML LIMS
AMBR 2.1.1 "top-hit strain determination" field added, "sequencing protocol" field removed plant parts moved from "environmental material" to "anatomical part" e.g. Leaf; living things in "environmental material" moved to "host (common name)" e.g. Tree; media picklist created, primers picklist created; environmental materials added e.g. Mobile phone, Mobile phone touchscreen; types of water labels updated e.g. Surface runoff; some environmental sites moved to "environmental material" e.g. Bird bath, Fish tank; new ontology IDs added, field defintions and guidance updated
-- -- -- -- --

ddooley and others added 2 commits January 19, 2023 21:27
Updating the test data for this release. Added to this open PR because it is dependent on the CanCOGeN template in this branch.
@ddooley ddooley merged commit b17f798 into master Jan 24, 2023
@ddooley ddooley deleted the ambr-update branch March 15, 2023 04:45
kennethbruskiewicz pushed a commit that referenced this pull request Aug 21, 2023
ambr and CanCoGeN schema updates
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants