v 1.5.0

[cleder]

User description

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PR Type

enhancement, tests

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Description

• Updated the package version to 1.5.0.
• Enhanced various functions in the pygeoif.functions module with error handling and simplifications.
• Introduced a new type alias GeomType for better type safety in geometry definitions.
• Added extensive hypothesis tests for the pygeoif.functions module.
• Updated GitHub Actions workflow to use the CI hypothesis profile for testing.
• Updated versions for several pre-commit hooks to their latest releases.
• Updated the README with new badges and documentation links.

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Changes walkthrough 📝

	Relevant files
Enhancement	5 files about.py Update package version to 1.5.0                                                    pygeoif/about.py Updated the version number from "1.4.0" to "1.5.0". +1/-1      factories.py Simplify geometry factory functions                                            pygeoif/factories.py Simplified the conditional assignment for the constructor in the shape function. Removed unnecessary list comprehension in GeometryCollection creation. +2/-5      functions.py Enhance functions with error handling and simplifications pygeoif/functions.py Added early return for signed_area function when coordinates are less than 3. Added error handling for zero or NaN signed_area in centroid calculation. Removed unnecessary comments and improved error handling across various functions. +13/-8    geometry.py Refactor geometry handling and improve type safety              pygeoif/geometry.py Added type casting for geometry types and improved handling of empty geometries. Simplified the representation of Point and MultiPoint classes. +30/-21  types.py Introduce new type alias for geometry types                            pygeoif/types.py Introduced a new type alias GeomType for geometry literals. Updated GeoInterface to use GeomType for the type field. +11/-1
Tests	1 files test_functions.py Add hypothesis tests for functions module                                tests/hypothesis/test_functions.py Added extensive hypothesis tests for various functions in the pygeoif.functions module. +322/-0
Configuration changes	2 files run-all-tests.yml Update GitHub Actions to use CI hypothesis profile              .github/workflows/run-all-tests.yml Modified pytest command to use the 'ci' hypothesis profile. +2/-2      .pre-commit-config.yaml Update pre-commit hooks versions                                                  .pre-commit-config.yaml Updated versions for various pre-commit hooks. +5/-5
Documentation	1 files README.rst Update documentation badges in README                                        README.rst Updated documentation badges and added new badges for various metrics. +36/-24

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🚀 This description was created by Ellipsis for commit e65b752

Summary:

Enhancements to testing, dependencies, and geometry handling in the pygeoif library for version 1.5.0.

Key points:

• Updated .github/workflows/run-all-tests.yml to include hypothesis profile for CI.
• Updated .pre-commit-config.yaml with new versions for hooks.
• Enhanced README.rst with additional badges and structured information.
• Updated docs/HISTORY.rst with the latest changes for version 1.5.0.
• Modified pygeoif/about.py to reflect the new version number.
• Improved handling of empty geometries in pygeoif/factories.py and pygeoif/functions.py.
• Added new hypothesis tests in tests/hypothesis/test_functions.py.

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Generated with ❤️ by ellipsis.dev

[semanticdiff-com]

Review changes with SemanticDiff.

Analyzed 14 of 19 files.

Overall, the semantic diff is 12% smaller than the GitHub diff.

1 files do not contain logic changes.

	Filename	Status
❔	.github/workflows/run-all-tests.yml	Unsupported file format
❔	.pre-commit-config.yaml	Unsupported file format
❔	README.rst	Unsupported file format
❔	docs/HISTORY.rst	Unsupported file format
✔️	docs/conf.py	Analyzed
✔️	pygeoif/about.py	Analyzed
✔️	pygeoif/factories.py	78.98% smaller
✔️	pygeoif/functions.py	47.31% smaller
✔️	pygeoif/geometry.py	52.19% smaller
✔️	pygeoif/types.py	Analyzed
❔	pyproject.toml	Unsupported file format
✔️	tests/conftest.py	71.43% smaller
✔️	tests/hypothesis/test_functions.py	Analyzed
✔️	tests/test_factories.py	No logic changes found
✔️	tests/test_functions.py	43.78% smaller
✔️	tests/test_line.py	Analyzed
✔️	tests/test_multipoint.py	Analyzed
✔️	tests/test_point.py	Analyzed
✔️	tests/test_polygon.py	Analyzed

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[what-the-diff]

PR Summary

• Updated Testing Process
  The process for running all of our automated tests has been adjusted to incorporate a more robust testing framework. This will ensure that our code is validated more thoroughly before releases.

• Improved Coding Standards
  Updates have been made to the tools we use to check our code's quality and style. This helps maintain a consistent and high quality code base across all of our files.

• ReadMe and Documentation Updates
  The instructions and examples in the ReadMe file have been updated for better understanding. Additionally, we've documented a new release in the project's change history.

• Code Version Updated
  The version of our code has been updated to 1.5.0 to reflect the new changes and improvements.

• Enhanced Error Handling
  The project's capability to handle unexpected situations like missing data has been improved. This makes the system more resilient and user-friendly.

• New Characteristics to Data
  A new type of geometric data that our system can handle has been introduced, making the system more versatile.

• Dependencies and Keywords Updated
  Project dependencies and keywords have been updated to maintain compatibility and discoverability of the project.

• Expanded Testing Suite
  New automated tests have been added to check individual parts of our system. This will ensure the different components work as expected even when changes are made.

• Improved Test Cases
  Several existing test cases have been modified to be more accurate and comprehensive in their evaluations. This will ensure we detect and address any regressions promptly.

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PR Description updated to latest commit (e65b752)

• Copy walkthrough table to "Files Changed" Tab

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PR Review 🔍

⏱️ Estimated effort to review [1-5]	4, because the PR includes a wide range of changes across multiple files, including updates to core functionality, type annotations, test enhancements, and configuration updates. The complexity and breadth of these changes require careful review to ensure compatibility and correctness.
🧪 Relevant tests	Yes
⚡ Possible issues	Possible Bug: The changes in error handling and conditions in functions like centroid and move_coordinates might introduce edge cases that are not fully covered by the tests.
	Performance Concern: The introduction of additional checks and the use of features like walrus operator in loops could potentially impact performance. Benchmarking might be necessary to validate the impact.
🔒 Security concerns	No

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PR Code Suggestions ✨

Category	Suggestions
Enhancement	Add a check for None values in the coords parameter to prevent errors. Consider adding a check for None values in the coords parameter before calling pygeoif.functions.centroid to avoid potential errors when None is passed inadvertently. tests/hypothesis/test_functions.py [42] -center, area = pygeoif.functions.centroid(coords=coords) +if coords is not None: + center, area = pygeoif.functions.centroid(coords=coords)
	Use math.isfinite for broader validation of coordinate values. Use math.isfinite instead of math.isnan to check for both NaN and infinite values, ensuring broader validation coverage. tests/hypothesis/test_functions.py [174] -if any(math.isnan(c) for c in flat_coords): +if any(not math.isfinite(c) for c in flat_coords): assert not pygeoif.functions.compare_coordinates(coords=coords, other=coords)
	Improve error handling by raising an exception for invalid input in the signed_area function. To ensure that the signed_area function handles invalid inputs gracefully, consider raising a ValueError when the input has less than 3 coordinates. This will provide clearer feedback to the user about the issue, rather than silently returning 0.0, which might be misleading in some contexts. pygeoif/functions.py [44-45] -if len(coords) < 3: # noqa: PLR2004 - return 0.0 +if len(coords) < 3: + raise ValueError("A polygon requires at least 3 points to compute an area.")
	Use a specific Hypothesis profile for CI to enhance test effectiveness. Add a specific Hypothesis profile for continuous integration to ensure that the tests are tailored for the CI environment, which can help in catching more subtle bugs and issues that might not be apparent during local development. .github/workflows/run-all-tests.yml [47] -pytest tests --hypothesis-profile=ci +pytest tests --hypothesis-profile=continuous-integration
Maintainability	Simplify the complex strategy structure for better maintainability. Replace the complex nested one_of and lists strategy with a simpler and more maintainable structure, possibly by defining helper functions or using composite strategies. tests/hypothesis/test_functions.py [53-79] +def float_tuple_strategy(): + return st.tuples(st.floats(), st.floats()) + +def float_triple_strategy(): + return st.tuples(st.floats(), st.floats(), st.floats()) + coords=st.one_of( st.floats(), - st.lists(st.tuples(st.floats(), st.floats())), - st.lists(st.tuples(st.floats(), st.floats(), st.floats())), - st.lists( - st.one_of( - st.lists(st.tuples(st.floats(), st.floats())), - st.lists(st.tuples(st.floats(), st.floats(), st.floats())), - ), - ), - st.tuples(st.floats(), st.floats()), - st.tuples(st.floats(), st.floats(), st.floats()), + st.lists(float_tuple_strategy()), + st.lists(float_triple_strategy()), + st.lists(st.one_of(float_tuple_strategy(), float_triple_strategy())), + float_tuple_strategy(), + float_triple_strategy(), )
	Avoid code duplication in test assertions. The assertion for p2d.coords[0] is duplicated in two test cases (test_force_2d_polygon). Consider refactoring the tests to avoid duplication, or ensure that each test case is testing a unique scenario. tests/test_factories.py [92] -assert p2d.coords[0] == ((0, 0), (0, 2), (2, 2), (2, 0), (0, 0)) +# Ensure this assertion is necessary for the specific test case or refactor to avoid duplication.
Bug	Ensure consistent return type for the coords method in the Point class. Ensure that the coords method in Point class returns a tuple even when the point is empty, to maintain consistency in the return type. pygeoif/geometry.py [295] -return () if self.is_empty else (self._geoms,) +return (self._geoms,) if not self.is_empty else ((),)
	Handle empty points in the from_points method to ensure correct LineString formation. Modify the from_points method to handle cases where points might be empty, ensuring that the resulting LineString is correctly formed even with empty points. pygeoif/geometry.py [415] return cls( - cast(LineType, tuple(point.coords[0] for point in args if point.coords)), + cast(LineType, tuple(point.coords[0] for point in args if point.coords and not point.is_empty)), )
Compatibility	Ensure compatibility with older Python versions by avoiding the walrus operator. The use of the walrus operator (:=) in the conditional statement for checking the constructor might not be supported in older Python versions. Consider using a more compatible approach if supporting older Python versions is required. pygeoif/factories.py [153] -if constructor := type_map.get(geometry["type"]): +constructor = type_map.get(geometry["type"]) +if constructor:
Clarity	Clarify the intention behind filtering out NaN values in test assertions. The test case test_coords_get_nan seems to filter out coordinates containing NaN. If this behavior is intentional and necessary, consider adding a comment explaining why coordinates with NaN are omitted, as it might not be immediately clear to other developers or maintainers. tests/test_line.py [27] +# Filtering out NaN values to maintain valid geometrical data assert line.coords == ((2, 2, 2),)
Best practice	Utilize the newly defined GeomType across the codebase for consistent type checking. The addition of GeomType as a Literal for geometry types is a good practice for type safety. Consider using this new type in other parts of the codebase where geometry type checks are performed to enhance maintainability and reduce errors. pygeoif/types.py [74] +# Use GeomType in other parts of the codebase for consistent type checking type: GeomType
	Track coverage changes over time by publishing test coverage reports. Add a step to generate and publish test coverage reports to a code coverage service or artifact storage to keep track of coverage changes over time and ensure that all parts of the code are adequately tested. .github/workflows/run-all-tests.yml [47] -pytest tests --hypothesis-profile=ci +pytest tests --hypothesis-profile=ci --cov=pygeoif --cov-report=xml +- name: Upload coverage to Codecov + uses: codecov/codecov-action@v2 + with: + file: ./coverage.xml + flags: unittests + fail_ci_if_error: true
Security	Ensure the latest security patches and updates are used during testing. Include a command to check for updates in dependencies before running tests to ensure the latest security patches and updates are tested against, enhancing the security and reliability of the software. .github/workflows/run-all-tests.yml [44] +python -m pip install --upgrade pip python -m pip install -e ".[tests]"
Performance	Cache Python packages to reduce CI build times. Add a step to cache the Python packages to speed up the installation process in subsequent runs, which can significantly reduce the CI build times. .github/workflows/run-all-tests.yml [44] -python -m pip install -e ".[tests]" +- uses: actions/cache@v2 + with: + path: ~/.cache/pip + key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} + restore-keys: | + ${{ runner.os }}-pip- +- run: python -m pip install -e ".[tests]"
	Utilize CI resources more efficiently by running tests in parallel. Consider adding parallel execution of tests to utilize the CI resources more efficiently and reduce the total runtime of the test suite. .github/workflows/run-all-tests.yml [47] -pytest tests --hypothesis-profile=ci +pytest tests --hypothesis-profile=ci -n auto

[ellipsis-dev]

👍 Looks good to me! Reviewed everything up to e65b752 in 2 minutes and 17 seconds

More details

• Looked at 1116 lines of code in 19 files
• Skipped 0 files when reviewing.
• Skipped posting 1 drafted comments based on config settings.

1. .github/workflows/run-all-tests.yml:47

• Draft comment:
  Add the --cov flag to the pytest command to ensure coverage reporting is included in the CI environment. This helps in maintaining and tracking the test coverage of the codebase effectively.

pytest tests --hypothesis-profile=ci --cov=pygeoif

• Reason this comment was not posted:
  Confidence of 0% on close inspection, compared to threshold of 50%.

Workflow ID: wflow_jn1RWRinEe6LNMnF

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