0.12.4

New features

• equalizeMeanIntensitiesOfSlices operation (similar to Fijis Bleaching Correction Simple Ratio)

Bugfixes

• Memory leak in boundingBox operation
• standardDeviation operation saved its results in the wrong result table column
• Some operations didn't have menu entries
  • ReplaceIntensity
  • ReplaceIntensities
  • StandardDeviationOfAllPixels
  • StandardDeviationOfMaskedPixels
  • VarianceOfAllPixels
  • VarianceOfMaskedPixels
  • MeanOfMaskedPixels
  • MinimumOfMaskedPixels
  • MaximumOfMaskedPixels
  • Resample
  • SaveAsTIF

0.12.3

Bugfixes:

• jython auto-completion of functions with name length < 4 caused an exception
• removed debug traces from jython auto-completion
• jython auto-completion now also works immediately after a bracket

New Features:

• resample operation

0.12.2

This release is just a new deployment as the former version wasn't deployed correctly

0.12.1

New features

• absoluteInplace
• differenceOfGaussianInplace
• touchMatrixToMesh
• watershed

New features for memory management

• setKeepReferences
• release
• clear
• reportMemory

0.12.0

New features

• AutomaticThresholdInplace
• ConnectedComponentsLabelingInplace

Backwards compatibility breaking changes

• The package net.haesleinhuepf.clij was renamed to net.haesleinhuepf.clijx to prevent confusion with CLIJ1. If you have import statements which broke: Check if you can access the methods via clijx.method() instead of net.haesleinhuepf.clij....Method.method().

0.11.3

Bug fixes:

• To make Fijis and CLIJs 3D-Objects Counter deliver identical resulting label maps, we switched from von-Neumann neighborhood to Moore-Neighborhood in connected components analysis.

0.11.2

Bug fixes:

• ConnectedComponentsAnalysis didn't work for 8/16 bit images

New Features:

• some kernels were internally translated to the new OpenCL dialect (CCA, replaceIntensities, excludeLabelsOnEdges, ParticleAnalyser, )
• added blurImages3D, blurInplace3D and blurBuffers3D to investigate their differences in performance
• drawTwoValueLine()
• stopWatch()
• saveAsTIF()
• countTouchingNeighbors()
• replaceIntensities()
• averageDistanceOfClosestPoints()

0.11.1

New features:

• Added convenience methods: clijx.pullRAI(object) and clijx.pullToRAI(object, rai)

0.11.0

New features

• API simplification: clijx.op().method() and clijx.op.method() are deprecated. Use clijx.method() instead. This will improve unified handling between matlab and python.
• API simplification: clijx.method(Float(5)) and clijx.method(Integer(5)) can now be called like clijx.method(5). This should improve coding in matlab and python
• CLIJx API was re-generated with readable variable names
• DetectLabelEdges operation
• Internally, kernels using the new OpenCL-dialect support now image-size independent compilation. This should improve performance when using differently sized images.
• Auto-completion for CLIJx with proper variable names and documentation
  

0.10.4

New features:

• OnlyzeroOverwriteMaximumBox
• OnlyzeroOverwriteMaximumDiamond

Bugfixes:

• ConnectedComponentsAnalysis might have found too many objects because a temporary image wasn't initialized to zero.