Replace isort, black, pylint with ruff

[theferrit32]

Closes #123

[theferrit32]

Closes #123

[bpblanken]

Here's what I got working in seqr if you're interested: https://github.com/broadinstitute/seqr-loading-pipelines/blob/main/pyproject.toml#L33-L54

[theferrit32]

@bpblanken cool I was looking through the other rule sets. Some of the style ones will be annoying to fix.

[theferrit32]

Wild suggestion here

clinvar_ingest/api/main.py:7:26: TCH002 Move third-party import `google.cloud.bigquery` into a type-checking block
  |
6 | from fastapi import BackgroundTasks, FastAPI, HTTPException, Request, status
7 | from google.cloud import bigquery
  |                          ^^^^^^^^ TCH002
8 |
9 | import clinvar_ingest.config
  |
  = help: Move into type-checking block

It wants to change it to this:

from typing import TYPE_CHECKING

if TYPE_CHECKING:
    from google.cloud import bigquery

[toneillbroad]

Nice work

[bpblanken]

@theferrit32 the TYPE_CHECKING thing is normal though it looks crazy. It's designed to help with circular imports for type annotations.

If you look hard, the only place bigquery is used is a type.