Aug 22

Camrie CU

matlab interface to PSudoMRI

Installation

CamrieCU matlab script that calls PsudoMRICU

1. Compile PsudoMRICU
2. Add bin to "PATH" environment variable
3. add environment variable ncores

• e.g. in matlab setenv('ncores','20')
• e.g. in bash ncores=20

Usage

before running these code please change the position of the files needed in testdata/testSignal.json and testdata/testNoise.json to your path e.g. change /data/PROJECTS/camrieCU/code/GUI2014bEdit/testdata/head_2x2x2.txt to $PATH_WHERE_YOU_CLONED_CAMRIECU/code/GUI2014bEdit/testdata/head_2x2x2.txt

1 Signal Simulation

cd 'code'
addpath(genpath(pwd))
camrieAPI('/data/PROJECTS/camrieCU/testdata/testSignal.json', '~/o.json', '~/l.json', '/data/tmp/trial1/')
%position of the jsonfile with data customization
%position of the jsonfile where the output will be written to
%position of the jsonfile where the log will be written to
%position of the directory where the calculatin will be done

1 Noise Simulation

cd 'code'
addpath(genpath(pwd))
camrieAPI('/data/PROJECTS/camrieCU/testdata/testNoise.json', '~/o.json', '~/l.json', '/data/tmp/trial1/')
%position of the jsonfile with data customization
%position of the jsonfile where the output will be written to
%position of the jsonfile where the log will be written to
%position of the directory where the calculatin will be done

Tested

• linux ubuntu 22.04
• docker linux ubuntu image

Camrie is part of Cloud MR.

Dr. Eros Montin, PhD 46&2 just ahead of me!