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@cmmid

Centre for mathematical modelling of infectious diseases

London School of Hygiene & Tropical Medicine

Hi there 👋

Welcome to the Center for Mathematical Modelling of Infectious Disease (CMMID) GitHub organization! We are a community of researchers, data scientists, and software engineers dedicated to advancing the understanding, forecasting, and control of infectious diseases through the power of mathematical and statistical models. 🌍🦠

Check out our projects: cmmid.io

🤝 Affiliated GitHub Organisations

Many of our members collaborate across various institutions and projects, leading to the development of affiliated organisations that contribute to the global effort in infectious disease modeling and public health research. Here are some of the notable organisations closely connected to the work of CMMID members:

  • Epiverse-TRACE: A global initiative to develop open-source tools for epidemiology and public health. This project focuses on trace and track methodologies, building infrastructure for outbreak analysis.
  • Epiforecasts: A group of epidemiologists, modelers, and R software developers focused on developing methodology and tools for real-time modelling and forecasting of infectious disease outbreaks.
  • Epinowcast: A group of infectious disease modellers, applied epidemiologists, software developers, and others building a suite of tools for real-time analysis of infectious diseases.
  • seroanalytics: A collection of tools to make inference of serological data a bit easier.

👩‍💻 Useful Resources

We have a wide range of resources here to help you get understand the work we do:

  • epirecipes: A cookbook of infectious disease transmission models.

📫 Contact Us

For more information, please feel free to reach out to us:

Popular repositories Loading

  1. covid-uk covid-uk Public

    Scenario analyses for COVID-19 outbreak in the United Kingdom

    R 64 28

  2. ringbp ringbp Public

    R 53 23

  3. cmmid.github.io cmmid.github.io Public

    HTML 32 14

  4. covid-age covid-age Public

    Analysis code and data for COVID-19 age-specific clinical fraction

    R 22 12

  5. hhh4-workshop hhh4-workshop Public

    Workshop on hhh4 and the endemic-epidemic framework

    HTML 15 4

  6. covidm_reports covidm_reports Public

    LMIC reports using the covidm model framework

    R 10 6

Repositories

Showing 10 of 35 repositories
  • paramix Public

    a package for aggregating parameters and disaggregating outcomes from compartmental models

    cmmid/paramix’s past year of commit activity
    R 2 0 0 0 Updated Oct 24, 2024
  • .github Public
    cmmid/.github’s past year of commit activity
    0 0 0 0 Updated Oct 21, 2024
  • cmmid/comix_mobility’s past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 16, 2024
  • mtm Public
    cmmid/mtm’s past year of commit activity
    R 0 1 2 0 Updated Sep 13, 2024
  • cmmid/effestimator’s past year of commit activity
    R 1 1 0 0 Updated Aug 21, 2024
  • rsvie Public
    cmmid/rsvie’s past year of commit activity
    C++ 0 0 0 0 Updated Jul 31, 2024
  • cmmid/covidbcell’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 2, 2024
  • cmmid/ab_boosting_published’s past year of commit activity
    R 1 0 0 0 Updated Feb 7, 2024
  • ringbp Public
    cmmid/ringbp’s past year of commit activity
    R 53 23 0 0 Updated Jan 18, 2024
  • cmmid/rsvmabmat’s past year of commit activity
    R 0 0 0 0 Updated Jan 16, 2024

People

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