🔖 release 0.4.9 #259


	name: Pytest Workflow

	on:
	# Trigger the workflow on push or pull request,
	# but only for the main branch
	push:
	branches:
	- master
	- devel
	pull_request:
	branches:
	- master
	- devel

	jobs:
	pytest:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v2

	- name: Cache conda
	uses: actions/cache@v3
	env:
	# Increase this value to reset cache if environment.yml has not changed
	CACHE_NUMBER: 0
	with:
	path: ~/conda_pkgs_dir
	key:
	${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
	hashFiles('environment.yml') }}

	- name: Setup conda
	uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: SMARTER-database
	channel-priority: strict
	environment-file: environment.yml
	use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!

	- name: Cache pip
	uses: actions/cache@v3
	with:
	# This path is specific to Ubuntu
	path: ~/.cache/pip
	# Look to see if there is a cache hit for the corresponding requirements file
	key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-
	${{ runner.os }}-

	- name: Conda info
	shell: bash -l {0}
	run: conda info

	- name: Install dependencies
	shell: bash -l {0}
	run: \|
	make requirements
	pip install coveralls

	- name: Conda list
	shell: pwsh
	run: conda list

	- name: Test with coverage
	shell: bash -l {0}
	run: coverage run --source src -m pytest

	- name: Uploading coverage to coveralls
	shell: bash -l {0}
	run: coveralls --service=github
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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