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1. MHH-RCUG/nf_wochenende MHH-RCUG/nf_wochenende Public

   A nextflow version of the Wochenende reference metagenome binning and visualization pipeline

   Python 13 2

2. MHH-RCUG/Wochenende MHH-RCUG/Wochenende Public

   Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

   Python 37 16

3. awesome-pangenomes awesome-pangenomes Public

   A list of software for pangenomics

   86 16

4. rs_demultiplex rs_demultiplex Public

   Simple demultiplexing of FASTQ, one oligo (barcode) at a time

   Rust 7 1

5. blacklister blacklister Public

   Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools

   Shell 3 1

6. guppy_on_slurm guppy_on_slurm Public

   Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

   Shell 15 5