Load schemas before calling print_deps

[kinow]

Closes #1765

Unit test fails for main, and passes on this branch. The command from the issue reported also passes on this branch.

Cheers,
-Bruno

[codecov]

Codecov Report

Merging #1766 (2e5cc2e) into main (67a1808) will decrease coverage by 28.41%.
The diff coverage is 0.00%.

@@             Coverage Diff             @@
##             main    #1766       +/-   ##
===========================================
- Coverage   82.48%   54.06%   -28.42%     
===========================================
  Files          47       47               
  Lines        8181     8173        -8     
  Branches     2232     2074      -158     
===========================================
- Hits         6748     4419     -2329     
- Misses        939     3218     +2279     
- Partials      494      536       +42     

Impacted Files	Coverage Δ
cwltool/main.py	32.09% <0.00%> (-43.37%)	⬇️
cwltool/__main__.py	0.00% <0.00%> (-100.00%)	⬇️
cwltool/factory.py	0.00% <0.00%> (-90.91%)	⬇️
cwltool/pack.py	8.50% <0.00%> (-79.50%)	⬇️
cwltool/cwlviewer.py	22.82% <0.00%> (-76.09%)	⬇️
cwltool/subgraph.py	11.60% <0.00%> (-68.51%)	⬇️
cwltool/provenance.py	14.07% <0.00%> (-67.00%)	⬇️
cwltool/provenance_profile.py	11.01% <0.00%> (-62.79%)	⬇️
cwltool/cuda.py	21.87% <0.00%> (-53.13%)	⬇️
cwltool/software_requirements.py	25.64% <0.00%> (-47.44%)	⬇️
... and 29 more

Help us with your feedback. Take ten seconds to tell us how you rate us. Have a feature suggestion? Share it here.

[kinow]

Hmmm, curious. I saw the tests failing, they are on the same test file that I used.

I picked the first test that failed for me, test_examples.py, test_trick_scandeps. I can confirm the command tested works on main, and fails on my branch.

However, cwltool --validate $file fails on both main and on this branch. So should a CWL file that fails validation, still be used on a unit test? The file is https://github.com/common-workflow-language/cwltool/blob/67a180835c001906cff4086963cd00ee99893498/tests/wf/trick_defaults.cwl

If so I will dig into the issue more and try to extract the part that loads the schemas from the resolve_and_validate_document function 👍